View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8924_high_2 (Length: 706)

Name: NF8924_high_2
Description: NF8924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8924_high_2
NF8924_high_2
[»] chr6 (4 HSPs)
chr6 (157-279)||(30821340-30821463)
chr6 (157-271)||(30816612-30816726)
chr6 (618-660)||(12796301-12796343)
chr6 (71-136)||(12092503-12092568)
[»] chr8 (8 HSPs)
chr8 (606-660)||(40127429-40127483)
chr8 (606-660)||(4239864-4239918)
chr8 (606-660)||(23083419-23083473)
chr8 (618-660)||(38184128-38184170)
chr8 (618-660)||(17023455-17023497)
chr8 (618-660)||(17553948-17553990)
chr8 (71-129)||(20995437-20995495)
chr8 (618-660)||(25369270-25369312)
[»] chr5 (8 HSPs)
chr5 (606-660)||(559975-560029)
chr5 (606-660)||(36939048-36939102)
chr5 (606-660)||(39521636-39521690)
chr5 (618-660)||(26670499-26670541)
chr5 (618-660)||(26942096-26942138)
chr5 (606-660)||(36426850-36426904)
chr5 (618-660)||(41999926-41999968)
chr5 (30-147)||(36522218-36522334)
[»] chr4 (7 HSPs)
chr4 (618-660)||(33465888-33465930)
chr4 (606-660)||(37261398-37261452)
chr4 (606-660)||(31271979-31272033)
chr4 (618-660)||(39318873-39318915)
chr4 (618-660)||(12877548-12877590)
chr4 (76-136)||(15841392-15841452)
chr4 (89-141)||(22027998-22028050)
[»] chr3 (8 HSPs)
chr3 (606-660)||(3686595-3686649)
chr3 (618-660)||(18470435-18470477)
chr3 (606-660)||(23662952-23663006)
chr3 (618-660)||(38206144-38206186)
chr3 (618-660)||(24756019-24756061)
chr3 (618-660)||(24765016-24765058)
chr3 (618-660)||(8886447-8886489)
chr3 (76-136)||(45395679-45395739)
[»] chr2 (7 HSPs)
chr2 (606-660)||(17972209-17972263)
chr2 (606-660)||(30649398-30649452)
chr2 (606-660)||(30654097-30654151)
chr2 (618-660)||(25480372-25480414)
chr2 (618-660)||(25487978-25488020)
chr2 (606-660)||(9182254-9182308)
chr2 (623-660)||(30616168-30616205)
[»] chr1 (4 HSPs)
chr1 (606-660)||(10138508-10138562)
chr1 (621-660)||(16750252-16750291)
chr1 (618-660)||(25853626-25853668)
chr1 (606-660)||(47453720-47453774)
[»] scaffold0070 (2 HSPs)
scaffold0070 (618-660)||(66013-66055)
scaffold0070 (618-660)||(61811-61853)
[»] scaffold0045 (1 HSPs)
scaffold0045 (618-660)||(81573-81615)
[»] chr7 (2 HSPs)
chr7 (618-660)||(21667780-21667822)
chr7 (76-136)||(30244342-30244402)


Alignment Details
Target: chr6 (Bit Score: 68; Significance: 5e-30; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 157 - 279
Target Start/End: Complemental strand, 30821463 - 30821340
Alignment:
Q  157 tattgagagtatccttttaattacttaaactaataatagttttattgaacacaagcaacatatatactaaattgtgaaagaac-aaataaatttttgagt 255  Q
    ||||||||||||  ||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||| || ||| || ||| ||||     
T  30821463 tattgagagtatttttttaattagttaaagtaagaatagttttattgaacacaagcaacatatatactaaattttgaaagcacaaaacaagtttgtgaga 30821364  T
Q  256 ctaaaatttcatataagaaactaa 279  Q
    ||||||||||||||||||| ||||    
T  30821363 ctaaaatttcatataagaacctaa 30821340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 157 - 271
Target Start/End: Complemental strand, 30816726 - 30816612
Alignment:
Q  157 tattgagagtatccttttaattacttaaactaataatagttttattgaacacaagcaacatatatactaaattgtgaaagaac--aaataaatttttgag 254  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||  ||||||||||| |||||| ||  ||| |||||| ||||    
T  30816726 tattgagagtatccttttaattagttaaagtaataatagttttattgaacacaagcaaca--tatactaaattatgaaagcacataaacaaatttgtgag 30816629  T
Q  255 tctaaaatttcatataa 271  Q
     ||||||||||||||||    
T  30816628 actaaaatttcatataa 30816612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 618 - 660
Target Start/End: Complemental strand, 12796343 - 12796301
Alignment:
Q  618 tctataacatctcgtacgatgttttcataactatttctgatta 660  Q
    ||||||||||||| ||||||| |||||||||||||||||||||    
T  12796343 tctataacatctcctacgatgctttcataactatttctgatta 12796301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 136
Target Start/End: Original strand, 12092503 - 12092568
Alignment:
Q  71 cagatcaacctcacaaatgagagaggcaccacattcttacccaaaaaattaaggtaatgtgtttat 136  Q
    |||| ||||||||||| |||||||| ||||||| |||||| |||||  |||||| |||| ||||||    
T  12092503 cagagcaacctcacaagtgagagagacaccacagtcttactcaaaaccttaaggcaatgagtttat 12092568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 606 - 660
Target Start/End: Complemental strand, 40127483 - 40127429
Alignment:
Q  606 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 660  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  40127483 cctcctcaaggttctataacatctggtacgatgttttcataactatttctgatta 40127429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 606 - 660
Target Start/End: Complemental strand, 4239918 - 4239864
Alignment:
Q  606 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 660  Q
    ||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||    
T  4239918 cctcctcgaggttctataacatctggtacgatgttttcataactatttctgatta 4239864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 606 - 660
Target Start/End: Complemental strand, 23083473 - 23083419
Alignment:
Q  606 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 660  Q
    ||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||    
T  23083473 cctcctcgaggttctataacatctggtacgatgttttcataactatttctgatta 23083419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 618 - 660
Target Start/End: Complemental strand, 38184170 - 38184128
Alignment:
Q  618 tctataacatctcgtacgatgttttcataactatttctgatta 660  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  38184170 tctataacatctcgtacgatgatttcataactatttctgatta 38184128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 618 - 660
Target Start/End: Original strand, 17023455 - 17023497
Alignment:
Q  618 tctataacatctcgtacgatgttttcataactatttctgatta 660  Q
    |||||||||||| |||| |||||||||||||||||||||||||    
T  17023455 tctataacatcttgtacaatgttttcataactatttctgatta 17023497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 618 - 660
Target Start/End: Original strand, 17553948 - 17553990
Alignment:
Q  618 tctataacatctcgtacgatgttttcataactatttctgatta 660  Q
    |||||||||||| |||| |||||||||||||||||||||||||    
T  17553948 tctataacatcttgtacaatgttttcataactatttctgatta 17553990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 71 - 129
Target Start/End: Original strand, 20995437 - 20995495
Alignment:
Q  71 cagatcaacctcacaaatgagagaggcaccacattcttacccaaaaaattaaggtaatg 129  Q
    |||| ||||| ||||| |||||||| ||||||||||||||||||||  |||||| ||||    
T  20995437 cagagcaaccacacaagtgagagagacaccacattcttacccaaaaccttaaggcaatg 20995495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 618 - 660
Target Start/End: Complemental strand, 25369312 - 25369270
Alignment:
Q  618 tctataacatctcgtacgatgttttcataactatttctgatta 660  Q
    ||||||||||| | || ||||||||||||||||||||||||||    
T  25369312 tctataacatcacatatgatgttttcataactatttctgatta 25369270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 606 - 660
Target Start/End: Original strand, 559975 - 560029
Alignment:
Q  606 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 660  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  559975 cctcctcaaggttctataacatctggtacgatgttttcataactatttctgatta 560029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 606 - 660
Target Start/End: Complemental strand, 36939102 - 36939048
Alignment:
Q  606 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 660  Q
    ||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||    
T  36939102 cctcctcgaggttctataacatctggtacgatgttttcataactatttctgatta 36939048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 606 - 660
Target Start/End: Original strand, 39521636 - 39521690
Alignment:
Q  606 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 660  Q
    ||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||    
T  39521636 cctcctcgaggttctataacatctggtacgatgttttcataactatttctgatta 39521690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 618 - 660
Target Start/End: Original strand, 26670499 - 26670541
Alignment:
Q  618 tctataacatctcgtacgatgttttcataactatttctgatta 660  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  26670499 tctataacatctggtacgatgttttcataactatttctgatta 26670541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 618 - 660
Target Start/End: Original strand, 26942096 - 26942138
Alignment:
Q  618 tctataacatctcgtacgatgttttcataactatttctgatta 660  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  26942096 tctataacatctggtacgatgttttcataactatttctgatta 26942138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 606 - 660
Target Start/End: Original strand, 36426850 - 36426904
Alignment:
Q  606 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 660  Q
    ||||||| ||| |||||||||||| ||||||||||||||||||||||| ||||||    
T  36426850 cctcctcgaggttctataacatctggtacgatgttttcataactatttatgatta 36426904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 618 - 660
Target Start/End: Original strand, 41999926 - 41999968
Alignment:
Q  618 tctataacatctcgtacgatgttttcataactatttctgatta 660  Q
    |||||||||||| |||| |||||||||||||||||||||||||    
T  41999926 tctataacatctggtacaatgttttcataactatttctgatta 41999968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 147
Target Start/End: Original strand, 36522218 - 36522334
Alignment:
Q  30 tcggtcatgaggggagtccgggagatcacccacatttaaatcagatcaacctcacaaatgagagaggcaccacattcttacccaaaaaattaaggtaatg 129  Q
    ||||||| |||||||||||||| || |||||||||| |   || | || || ||||| |||||||| ||||||| ||||||||||||  ||||| |||||    
T  36522218 tcggtcaagaggggagtccggg-gaccacccacattcaggccaaagcagccgcacaagtgagagagacaccacactcttacccaaaaccttaagataatg 36522316  T
Q  130 tgtttataggtcttctca 147  Q
     |||||| |||| |||||    
T  36522317 ggtttattggtcctctca 36522334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 618 - 660
Target Start/End: Complemental strand, 33465930 - 33465888
Alignment:
Q  618 tctataacatctcgtacgatgttttcataactatttctgatta 660  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  33465930 tctataacatctcgtacgatgttttcataactatttctgatta 33465888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 606 - 660
Target Start/End: Complemental strand, 37261452 - 37261398
Alignment:
Q  606 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 660  Q
    |||| |||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  37261452 cctcatcaaggttctataacatctggtacgatgttttcataactatttctgatta 37261398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 606 - 660
Target Start/End: Original strand, 31271979 - 31272033
Alignment:
Q  606 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 660  Q
    |||| |||||| |||||||||||| ||||||||||||||||||||||| ||||||    
T  31271979 cctcatcaaggttctataacatctagtacgatgttttcataactatttttgatta 31272033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 618 - 660
Target Start/End: Original strand, 39318873 - 39318915
Alignment:
Q  618 tctataacatctcgtacgatgttttcataactatttctgatta 660  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  39318873 tctataacatctcgtatgatgttttcataactatttctgatta 39318915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 618 - 660
Target Start/End: Original strand, 12877548 - 12877590
Alignment:
Q  618 tctataacatctcgtacgatgttttcataactatttctgatta 660  Q
    ||||||||||||| || ||||||||||||||||||||||||||    
T  12877548 tctataacatctcatatgatgttttcataactatttctgatta 12877590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 15841392 - 15841452
Alignment:
Q  76 caacctcacaaatgagagaggcaccacattcttacccaaaaaattaaggtaatgtgtttat 136  Q
    ||||| ||||| |||||||| || |||| ||||||||||||  |||||| |||||||||||    
T  15841392 caaccacacaagtgagagagacatcacactcttacccaaaaccttaaggcaatgtgtttat 15841452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 22027998 - 22028050
Alignment:
Q  89 gagagaggcaccacattcttacccaaaaaattaaggtaatgtgtttataggtc 141  Q
    ||||||| ||||||||||||||||||||  |||||| ||| ||||||| ||||    
T  22027998 gagagagacaccacattcttacccaaaaccttaaggcaatatgtttatgggtc 22028050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 606 - 660
Target Start/End: Original strand, 3686595 - 3686649
Alignment:
Q  606 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 660  Q
    ||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||    
T  3686595 cctcctcgaggttctataacatctggtacgatgttttcataactatttctgatta 3686649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 618 - 660
Target Start/End: Original strand, 18470435 - 18470477
Alignment:
Q  618 tctataacatctcgtacgatgttttcataactatttctgatta 660  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  18470435 tctataacatctggtacgatgttttcataactatttctgatta 18470477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 606 - 660
Target Start/End: Complemental strand, 23663006 - 23662952
Alignment:
Q  606 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 660  Q
    |||| |||||| |||||||||||| ||||||||||||||||||||||| ||||||    
T  23663006 cctcatcaaggttctataacatctagtacgatgttttcataactatttttgatta 23662952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 618 - 660
Target Start/End: Complemental strand, 38206186 - 38206144
Alignment:
Q  618 tctataacatctcgtacgatgttttcataactatttctgatta 660  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  38206186 tctataacatcttgtacgatgttttcataactatttctgatta 38206144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 618 - 660
Target Start/End: Complemental strand, 24756061 - 24756019
Alignment:
Q  618 tctataacatctcgtacgatgttttcataactatttctgatta 660  Q
    ||||||||||| |||| ||||||||||||||||||||||||||    
T  24756061 tctataacatcacgtatgatgttttcataactatttctgatta 24756019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 618 - 660
Target Start/End: Complemental strand, 24765058 - 24765016
Alignment:
Q  618 tctataacatctcgtacgatgttttcataactatttctgatta 660  Q
    ||||||||||| |||| ||||||||||||||||||||||||||    
T  24765058 tctataacatcacgtatgatgttttcataactatttctgatta 24765016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 618 - 660
Target Start/End: Original strand, 8886447 - 8886489
Alignment:
Q  618 tctataacatctcgtacgatgttttcataactatttctgatta 660  Q
    |||||||||||| |||| |||||||||||||||||| ||||||    
T  8886447 tctataacatctggtacaatgttttcataactatttatgatta 8886489  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 45395679 - 45395739
Alignment:
Q  76 caacctcacaaatgagagaggcaccacattcttacccaaaaaattaaggtaatgtgtttat 136  Q
    ||||| ||||| |||||||| ||||||| |||||||||||| ||||||  |||| ||||||    
T  45395679 caaccccacaagtgagagagacaccacactcttacccaaaacattaagacaatgggtttat 45395739  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 606 - 660
Target Start/End: Complemental strand, 17972263 - 17972209
Alignment:
Q  606 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 660  Q
    ||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||    
T  17972263 cctcctcgaggttctataacatctggtacgatgttttcataactatttctgatta 17972209  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 606 - 660
Target Start/End: Original strand, 30649398 - 30649452
Alignment:
Q  606 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 660  Q
    ||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||    
T  30649398 cctcctcgaggttctataacatctggtacgatgttttcataactatttctgatta 30649452  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 606 - 660
Target Start/End: Original strand, 30654097 - 30654151
Alignment:
Q  606 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 660  Q
    ||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||    
T  30654097 cctcctcgaggttctataacatctggtacgatgttttcataactatttctgatta 30654151  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 618 - 660
Target Start/End: Complemental strand, 25480414 - 25480372
Alignment:
Q  618 tctataacatctcgtacgatgttttcataactatttctgatta 660  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  25480414 tctataacatctggtacgatgttttcataactatttctgatta 25480372  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 618 - 660
Target Start/End: Complemental strand, 25488020 - 25487978
Alignment:
Q  618 tctataacatctcgtacgatgttttcataactatttctgatta 660  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  25488020 tctataacatctggtacgatgttttcataactatttctgatta 25487978  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 606 - 660
Target Start/End: Complemental strand, 9182308 - 9182254
Alignment:
Q  606 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 660  Q
    ||||||| ||| |||||||||||| ||| ||| ||||||||||||||||||||||    
T  9182308 cctcctcgaggttctataacatctggtatgatattttcataactatttctgatta 9182254  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 623 - 660
Target Start/End: Original strand, 30616168 - 30616205
Alignment:
Q  623 aacatctcgtacgatgttttcataactatttctgatta 660  Q
    |||||||| |||||||||||||||||||||||||||||    
T  30616168 aacatctcctacgatgttttcataactatttctgatta 30616205  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 606 - 660
Target Start/End: Original strand, 10138508 - 10138562
Alignment:
Q  606 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 660  Q
    ||||||||||| |||||||||| | ||||||||||||||||||||||||||||||    
T  10138508 cctcctcaaggttctataacatttggtacgatgttttcataactatttctgatta 10138562  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 621 - 660
Target Start/End: Complemental strand, 16750291 - 16750252
Alignment:
Q  621 ataacatctcgtacgatgttttcataactatttctgatta 660  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  16750291 ataacatctagtacgatgttttcataactatttctgatta 16750252  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 618 - 660
Target Start/End: Original strand, 25853626 - 25853668
Alignment:
Q  618 tctataacatctcgtacgatgttttcataactatttctgatta 660  Q
    ||||||||||||  |||||||||||||||||||||||||||||    
T  25853626 tctataacatctgatacgatgttttcataactatttctgatta 25853668  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 606 - 660
Target Start/End: Complemental strand, 47453774 - 47453720
Alignment:
Q  606 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 660  Q
    ||||||| ||| |||||||||||| |||| |||||||||||||||||| ||||||    
T  47453774 cctcctcgaggttctataacatctagtacaatgttttcataactatttttgatta 47453720  T

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Target: scaffold0070 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 618 - 660
Target Start/End: Original strand, 66013 - 66055
Alignment:
Q  618 tctataacatctcgtacgatgttttcataactatttctgatta 660  Q
    ||||||||||| |||| ||||||||||||||||||||||||||    
T  66013 tctataacatcacgtatgatgttttcataactatttctgatta 66055  T

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Target: scaffold0070; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 618 - 660
Target Start/End: Original strand, 61811 - 61853
Alignment:
Q  618 tctataacatctcgtacgatgttttcataactatttctgatta 660  Q
    ||||||||||| | || ||||||||||||||||||||||||||    
T  61811 tctataacatcacatatgatgttttcataactatttctgatta 61853  T

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Target: scaffold0045 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 618 - 660
Target Start/End: Original strand, 81573 - 81615
Alignment:
Q  618 tctataacatctcgtacgatgttttcataactatttctgatta 660  Q
    ||||||||||||||||| |||||||||||||||||||| ||||    
T  81573 tctataacatctcgtacaatgttttcataactatttctaatta 81615  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 618 - 660
Target Start/End: Original strand, 21667780 - 21667822
Alignment:
Q  618 tctataacatctcgtacgatgttttcataactatttctgatta 660  Q
    ||||||||||||||||| ||||  |||||||||||||||||||    
T  21667780 tctataacatctcgtacaatgtactcataactatttctgatta 21667822  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 30244402 - 30244342
Alignment:
Q  76 caacctcacaaatgagagaggcaccacattcttacccaaaaaattaaggtaatgtgtttat 136  Q
    ||||| ||||| |||||||| ||||||| ||||||||||||  |||||| |||| ||||||    
T  30244402 caaccacacaagtgagagagacaccacactcttacccaaaaccttaaggcaatgggtttat 30244342  T

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