View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8924_high_24 (Length: 241)
Name: NF8924_high_24
Description: NF8924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8924_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 23386749 - 23386546
Alignment:
| Q |
20 |
agttaggatgcgatattatgtatatataagataatgtcgtcatattattatttaaggtggggttcaggagttattggattctgttgcagtctgccacata |
119 |
Q |
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| T |
23386749 |
agttaggatgcgatattatgtatatataagataatgtcgtcatattattatttaaggtggggttcaggggttattggattctgttgcagtctgccacata |
23386650 |
T |
|
| Q |
120 |
tataagaacttcccctcataacacctcataccatggatatgttctgcaataatgcattggaatcgttaaaagaagggcaaaagaggggttttgtatgaaa |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
23386649 |
tataagaacttcccctcataacacctcataccatggatatgttctgcaataatgcattggaatcgtttaaagaagggcaaaagaggggttttgtatgtaa |
23386550 |
T |
|
| Q |
220 |
aaag |
223 |
Q |
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|||| |
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| T |
23386549 |
aaag |
23386546 |
T |
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