View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8924_high_28 (Length: 208)

Name: NF8924_high_28
Description: NF8924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8924_high_28
NF8924_high_28
[»] scaffold0012 (1 HSPs)
scaffold0012 (15-58)||(202332-202375)
[»] chr7 (3 HSPs)
chr7 (15-58)||(43364179-43364222)
chr7 (15-58)||(5222284-5222327)
chr7 (17-58)||(29865181-29865223)
[»] chr1 (5 HSPs)
chr1 (15-58)||(9315892-9315935)
chr1 (15-58)||(19329305-19329348)
chr1 (15-58)||(21814749-21814792)
chr1 (17-58)||(47293952-47293993)
chr1 (18-58)||(45620397-45620437)
[»] chr3 (7 HSPs)
chr3 (14-58)||(20628599-20628643)
chr3 (17-58)||(4501049-4501090)
chr3 (17-58)||(4644574-4644615)
chr3 (17-58)||(27900458-27900499)
chr3 (15-58)||(4506375-4506418)
chr3 (19-58)||(9331391-9331430)
chr3 (15-59)||(25805754-25805798)
[»] chr8 (4 HSPs)
chr8 (15-54)||(44246155-44246194)
chr8 (19-57)||(2268603-2268641)
chr8 (17-58)||(9907157-9907198)
chr8 (15-58)||(5064246-5064289)
[»] chr5 (5 HSPs)
chr5 (15-58)||(42729061-42729104)
chr5 (15-52)||(9335396-9335433)
chr5 (17-58)||(3413542-3413583)
chr5 (17-58)||(4694463-4694504)
chr5 (17-58)||(12919202-12919243)
[»] chr4 (4 HSPs)
chr4 (15-58)||(40976843-40976886)
chr4 (19-58)||(667924-667963)
chr4 (17-58)||(8847786-8847828)
chr4 (15-48)||(23543791-23543824)
[»] chr6 (3 HSPs)
chr6 (17-58)||(13105135-13105176)
chr6 (19-58)||(18765619-18765658)
chr6 (19-58)||(1051151-1051191)
[»] chr2 (1 HSPs)
chr2 (17-58)||(22599899-22599940)
[»] scaffold0265 (1 HSPs)
scaffold0265 (15-58)||(18017-18060)


Alignment Details
Target: scaffold0012 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 202375 - 202332
Alignment:
Q  15 cctgtggagacgataacataaatacttacttttgatactacatc 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  202375 cctgtggagacgataacataaatacttacttttgatactacatc 202332  T

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Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 43364222 - 43364179
Alignment:
Q  15 cctgtggagacgataacataaatacttacttttgatactacatc 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  43364222 cctgtggagacgataacataaatacttacttttgatactacatc 43364179  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 5222327 - 5222284
Alignment:
Q  15 cctgtggagacgataacataaatacttacttttgatactacatc 58  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  5222327 cctgtggagacgataacaaaaatacttacttttgatactacatc 5222284  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 29865181 - 29865223
Alignment:
Q  17 tgtggagacgata-acataaatacttacttttgatactacatc 58  Q
    ||||||||||||| ||| |||||||||||||||||||||||||    
T  29865181 tgtggagacgatacacaaaaatacttacttttgatactacatc 29865223  T

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Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 9315935 - 9315892
Alignment:
Q  15 cctgtggagacgataacataaatacttacttttgatactacatc 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  9315935 cctgtggagacgataacataaatacttacttttgatactacatc 9315892  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 19329348 - 19329305
Alignment:
Q  15 cctgtggagacgataacataaatacttacttttgatactacatc 58  Q
    ||||||||||||||| || |||||||||||||||||||||||||    
T  19329348 cctgtggagacgatagcaaaaatacttacttttgatactacatc 19329305  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 21814792 - 21814749
Alignment:
Q  15 cctgtggagacgataacataaatacttacttttgatactacatc 58  Q
    |||||||||||||||||  ||| |||||||||||||||||||||    
T  21814792 cctgtggagacgataactaaaaaacttacttttgatactacatc 21814749  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 47293993 - 47293952
Alignment:
Q  17 tgtggagacgataacataaatacttacttttgatactacatc 58  Q
    |||||||||||||||| ||||| |||||||| ||||||||||    
T  47293993 tgtggagacgataacaaaaatatttacttttaatactacatc 47293952  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 45620397 - 45620437
Alignment:
Q  18 gtggagacgataacataaatacttacttttgatactacatc 58  Q
    ||||||| ||||||| |||||||||||||| ||||||||||    
T  45620397 gtggagatgataacaaaaatacttacttttaatactacatc 45620437  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 20628599 - 20628643
Alignment:
Q  14 acctgtggagacgataacataaatacttacttttgatactacatc 58  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  20628599 acctgtggagacgataacaaaaatacttacttttgatactacatc 20628643  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 4501090 - 4501049
Alignment:
Q  17 tgtggagacgataacataaatacttacttttgatactacatc 58  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  4501090 tgtggagacgataacaaaaatacttacttttgatactacatc 4501049  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 4644574 - 4644615
Alignment:
Q  17 tgtggagacgataacataaatacttacttttgatactacatc 58  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  4644574 tgtggagacgataacaaaaatacttacttttgatactacatc 4644615  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 27900499 - 27900458
Alignment:
Q  17 tgtggagacgataacataaatacttacttttgatactacatc 58  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  27900499 tgtggaaacgataacataaatacttacttttgatactacatc 27900458  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 4506418 - 4506375
Alignment:
Q  15 cctgtggagacgataacataaatacttacttttgatactacatc 58  Q
    |||||||||| ||||||| |||||||||||||||||||||||||    
T  4506418 cctgtggagatgataacaaaaatacttacttttgatactacatc 4506375  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 9331391 - 9331430
Alignment:
Q  19 tggagacgataacataaatacttacttttgatactacatc 58  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  9331391 tggagacgatgacaaaaatacttacttttgatactacatc 9331430  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 25805754 - 25805798
Alignment:
Q  15 cctgtggagacgataacataaatacttacttttgatactacatcg 59  Q
    |||||| ||||||||||| ||||||||| ||||||||| ||||||    
T  25805754 cctgtgaagacgataacaaaaatacttatttttgatacaacatcg 25805798  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 44246155 - 44246194
Alignment:
Q  15 cctgtggagacgataacataaatacttacttttgatacta 54  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  44246155 cctgtggagacgataacataaatacttacttttgatacta 44246194  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 2268603 - 2268641
Alignment:
Q  19 tggagacgataacataaatacttacttttgatactacat 57  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  2268603 tggagacgataacaaaaatacttacttttgatactacat 2268641  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 9907157 - 9907198
Alignment:
Q  17 tgtggagacgataacataaatacttacttttgatactacatc 58  Q
    |||||||||||||||| ||||||||||||||||||| |||||    
T  9907157 tgtggagacgataacaaaaatacttacttttgatacaacatc 9907198  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 5064246 - 5064289
Alignment:
Q  15 cctgtggagacgataacataaatacttacttttgatactacatc 58  Q
    |||||| ||||||||||| |||||||||||||||||| ||||||    
T  5064246 cctgtgaagacgataacaaaaatacttacttttgatattacatc 5064289  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 42729104 - 42729061
Alignment:
Q  15 cctgtggagacgataacataaatacttacttttgatactacatc 58  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  42729104 cctgtggagacgataacaaaaatacttacttttgatactacatc 42729061  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 9335396 - 9335433
Alignment:
Q  15 cctgtggagacgataacataaatacttacttttgatac 52  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9335396 cctgtggagacgataacataaatacttacttttgatac 9335433  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 3413542 - 3413583
Alignment:
Q  17 tgtggagacgataacataaatacttacttttgatactacatc 58  Q
    |||||||||||| ||| |||||||||||||||||||||||||    
T  3413542 tgtggagacgatgacaaaaatacttacttttgatactacatc 3413583  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 4694463 - 4694504
Alignment:
Q  17 tgtggagacgataacataaatacttacttttgatactacatc 58  Q
    |||| ||||||||||| |||||||||||||||||||||||||    
T  4694463 tgtgaagacgataacaaaaatacttacttttgatactacatc 4694504  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 12919202 - 12919243
Alignment:
Q  17 tgtggagacgataacataaatacttacttttgatactacatc 58  Q
    |||||||||||||||  |||||||||||||||||||||||||    
T  12919202 tgtggagacgataacgaaaatacttacttttgatactacatc 12919243  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 40976843 - 40976886
Alignment:
Q  15 cctgtggagacgataacataaatacttacttttgatactacatc 58  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  40976843 cctgtggagaagataacataaatacttacttttgatactacatc 40976886  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 667924 - 667963
Alignment:
Q  19 tggagacgataacataaatacttacttttgatactacatc 58  Q
    ||||||| |||||| |||||||||||||||||||||||||    
T  667924 tggagacaataacaaaaatacttacttttgatactacatc 667963  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 8847828 - 8847786
Alignment:
Q  17 tgtggagacgata-acataaatacttacttttgatactacatc 58  Q
    ||||||||||||| ||| |||||||||||||||||||||||||    
T  8847828 tgtggagacgatacacaaaaatacttacttttgatactacatc 8847786  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 23543791 - 23543824
Alignment:
Q  15 cctgtggagacgataacataaatacttacttttg 48  Q
    |||||||||||||||||||||||| |||||||||    
T  23543791 cctgtggagacgataacataaatatttacttttg 23543824  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 13105176 - 13105135
Alignment:
Q  17 tgtggagacgataacataaatacttacttttgatactacatc 58  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  13105176 tgtggagacgataacaaaaatacttacttttgatactacatc 13105135  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 18765658 - 18765619
Alignment:
Q  19 tggagacgataacataaatacttacttttgatactacatc 58  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  18765658 tggagacgataacagaaatacttacttttgatactacatc 18765619  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 1051191 - 1051151
Alignment:
Q  19 tggagacgataacataaa-tacttacttttgatactacatc 58  Q
    |||||||||||||| ||| ||||||||||||||||||||||    
T  1051191 tggagacgataacaaaaaatacttacttttgatactacatc 1051151  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 22599940 - 22599899
Alignment:
Q  17 tgtggagacgataacataaatacttacttttgatactacatc 58  Q
    |||||||||||||||| |||||||||||||||||| ||||||    
T  22599940 tgtggagacgataacaaaaatacttacttttgataatacatc 22599899  T

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Target: scaffold0265 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 18017 - 18060
Alignment:
Q  15 cctgtggagacgataacataaatacttacttttgatactacatc 58  Q
    |||||||||||||||||  ||| |||||||||||||||||||||    
T  18017 cctgtggagacgataactaaaaaacttacttttgatactacatc 18060  T

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