View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8924_high_6 (Length: 478)
Name: NF8924_high_6
Description: NF8924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8924_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 14 - 459
Target Start/End: Complemental strand, 27076110 - 27075665
Alignment:
| Q |
14 |
tggacatcactgacaagatgtacttcagatatgacggcagcaataacatcatcatcgtcatatttcttatcatctccttgagtcaaatttgcttttggct |
113 |
Q |
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||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27076110 |
tggacatcattgacaagatgtactttagatatgacggcagcaataacatcatcatcgtcatatttcttatcatctccttgagtcaaatttgcttttggct |
27076011 |
T |
|
| Q |
114 |
taggaggctggccattcactttccgatatctacagtgatatgctttatgtcctttctttccacacacatagcactcacctaggtttgctttgaaattagg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27076010 |
taggaggctggccattcactttccgatatctgcagtgatatgctttatgtcctttctttccacacacatagcactcacctaggtttgctttgaaattagg |
27075911 |
T |
|
| Q |
214 |
gttagttactttgagagcatgatcagatttgttctcatacctctgttgtttacgcgcattgttttggatcagatttgctctcgattccaaagctttggca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27075910 |
gttagttactttgagagcatgatcagatttgttctcatacctctgttgtttacgcgcattgttttggatcagatttgctctcgattccaaagctttggca |
27075811 |
T |
|
| Q |
314 |
cgtgcagctccgcattccttcctgctggtgtcttcaatgattatgtgcctgatgagatcattaagagacatctgcttgtgtttatgtttcagctgttgct |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27075810 |
cgtgcagctccgcattccttcctgctggtgtcttcaatgattatgtgcctgatgagatcattaagagacatctgcttgtgtttatgtttcagctgttgct |
27075711 |
T |
|
| Q |
414 |
tgtaatcgtcccatgaactaggcaacttttcaaccagggcagcagc |
459 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27075710 |
tgtaatcgtcccatgaactaggcaacttttcaaccagggcagcagc |
27075665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 14 - 248
Target Start/End: Complemental strand, 26051092 - 26050858
Alignment:
| Q |
14 |
tggacatcactgacaagatgtacttcagatatgacggcagcaataacatcatcatcgtcatatttcttatcatctccttgagtcaaatttgcttttggct |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26051092 |
tggacatcactgacaagatgtacttcagatatgacggcaaccataacatcatcatcgtcatatttcttatcatctccttgagtcaaatttgcttttggct |
26050993 |
T |
|
| Q |
114 |
taggaggctggccattcactttccgatatctacagtgatatgctttatgtcctttctttccacacacatagcactcacctaggtttgctttgaaattagg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26050992 |
taggaggctggccattcactttccgatatctgcagtgatatgctttatgtcctttctttccacacacatagcactcacctaggtttgctttgaaattagg |
26050893 |
T |
|
| Q |
214 |
gttagttactttgagagcatgatcagatttgttct |
248 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
26050892 |
gttagttactttgagagcatgatcagatttgttct |
26050858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 280 - 459
Target Start/End: Complemental strand, 26050872 - 26050693
Alignment:
| Q |
280 |
gatcagatttgctctcgattccaaagctttggcacgtgcagctccgcattccttcctgctggtgtcttcaatgattatgtgcctgatgagatcattaaga |
379 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26050872 |
gatcagatttgttctggattccaaagctttggcacgtgcagctccgcattccttcctgctggtgtcttcaatgattatgtgcctgatgagatcattaaga |
26050773 |
T |
|
| Q |
380 |
gacatctgcttgtgtttatgtttcagctgttgcttgtaatcgtcccatgaactaggcaacttttcaaccagggcagcagc |
459 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26050772 |
gacatctgcttgtgtttatgtttcagctgttgcttgtaatcgtcccatgaactaggcaacttttcaaccagggcagcagc |
26050693 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 449
Target Start/End: Original strand, 14635432 - 14635862
Alignment:
| Q |
17 |
acatcactgacaagatgtacttcagatatgacggcagcaataacatcatcatcgtcatatttcttatcatctcct-tgagtcaaatttgcttttggctta |
115 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||| |||||||||||||||| || |||||||||||| || ||| |||||||||||||||||||| |
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| T |
14635432 |
acatcactgacaagatgcacttcagatatgatggcaacaataacatcatcatcatc---tttcttatcatcccccctgaatcaaatttgcttttggctta |
14635528 |
T |
|
| Q |
116 |
ggaggctggccattcactttccgatatctacagtgatatgctttatgtcctttctttccacacacatagcactcacctaggtttgctttgaaattagggt |
215 |
Q |
| |
|
|||||||| ||||||||||| || |||| |||||||||| ||||||| |||||||||||||||||||||| | |||||||||||| || ||||| | |
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| T |
14635529 |
ggaggctgatcattcactttctgaaatctgcagtgatatgttttatgttctttctttccacacacatagcagtaacctaggtttgccttaaaattgattt |
14635628 |
T |
|
| Q |
216 |
tagttactttgagagcatgatcagatttgttctcatacctctgttgtttacgcgcattgttttggatcagatttgctctcgattccaaagctttggcacg |
315 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||| |||||||| | || |||||||||||| ||||||||||| || |||||||||||||| || |
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|
| T |
14635629 |
tagttactttgagagcatgatcatatttgttttcatacccttgttgtttgcacgtattgttttggattagatttgctcttgactccaaagctttggctcg |
14635728 |
T |
|
| Q |
316 |
tgcagctccgcattccttcctgctggtgtcttcaatgattatgtgcctgatgagatcattaagagacatctgcttgtgtttatgtttcagctgttgcttg |
415 |
Q |
| |
|
||| ||| | ||||| || |||||||| |||||||| ||| ||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||| |
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|
| T |
14635729 |
tgcggcttcacattcttttttgctggtgccttcaatgtttacgtgcctgatgagatcattaagagacatatgcttgtgcttatgtttcatttgttgcttg |
14635828 |
T |
|
| Q |
416 |
taatcgtcccatgaactaggcaacttttcaacca |
449 |
Q |
| |
|
||||| | |||| | |||| ||||||||||||| |
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| T |
14635829 |
taatcattccataagttaggaaacttttcaacca |
14635862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 145; Significance: 4e-76; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 127 - 459
Target Start/End: Complemental strand, 36611012 - 36610680
Alignment:
| Q |
127 |
attcactttccgatatctacagtgatatgctttatgtcctttctttccacacacatagcactcacctaggtttgctttgaaattagggttagttactttg |
226 |
Q |
| |
|
|||||||||||||| ||| || |||||||||||||| ||||||||||||||||||||||| ||||||||| ||| ||||| ||||||||||| || |
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|
| T |
36611012 |
attcactttccgatgtctgcaatgatatgctttatgacctttctttccacacacatagcaacaacctaggttcaatttaaaattgaggttagttactctg |
36610913 |
T |
|
| Q |
227 |
agagcatgatcagatttgttctcatacctctgttgtttacgcgcattgttttggat--cagatttgctctcgattccaaagctttggcacgtgcagctcc |
324 |
Q |
| |
|
|| ||||||||| ||| || ||||| ||||||||||| || | |||||||||||| |||||| ||||||| |||||||||||||| || |||||||| |
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|
| T |
36610912 |
agggcatgatcatttttattttcatatctctgttgtttgcgtgtattgttttggattatagattttctctcgactccaaagctttggctcgagcagctcc |
36610813 |
T |
|
| Q |
325 |
gcattccttcctgctggtgtcttcaatgattatgtgcctgatgagatcattaagagacatctgcttgtgtttatgtttcagctgttgcttgtaatcgtcc |
424 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||| ||||||||||| |||||||||||||| | | |
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|
| T |
36610812 |
acattcctttctgctggtgtcttcaatgattatgt--ctgatgagatcattaagaaacatttgcttgtgcttatgtttcagttgttgcttgtaatcattc |
36610715 |
T |
|
| Q |
425 |
catgaactaggcaacttttcaaccagggcagcagc |
459 |
Q |
| |
|
||||| |||||||||||||||| |||| |||| |
|
|
| T |
36610714 |
catgagtcgggcaacttttcaaccaaggcatcagc |
36610680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 96 - 319
Target Start/End: Original strand, 36611023 - 36611240
Alignment:
| Q |
96 |
tcaaatttgcttttggcttaggaggctggccattcactttccgatatctacagtgatatgctttatgtcctttctttccacacacatagcactcacctag |
195 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||| |||||||| || ||||||| |||||| ||||||||| |||||| | | || | |||| |
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|
| T |
36611023 |
tcaaatttgcttttggcttaggaggttggccatacacttttcgatatctgcaatgatatgttttatgacctttctttacacaca-acaaca---aactag |
36611118 |
T |
|
| Q |
196 |
gtttgctttgaaattagggttagttactttgagagcatgatcagatttgttctcatacctctgttgtttacgcgcattgttttggatcagatttgctctc |
295 |
Q |
| |
|
||| || || || |||||||||||| ||| |||||||||| ||| || ||||| |||||| ||| || | |||||| ||||| || ||||||||| |
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|
| T |
36611119 |
gttcaattcaaatttggggttagttactccgagggcatgatcagttttattttcata--tctgttctttgcgtgtattgttgtggattaggtttgctctc |
36611216 |
T |
|
| Q |
296 |
gattccaaagctttggcacgtgca |
319 |
Q |
| |
|
|| | |||||||||||| |||||| |
|
|
| T |
36611217 |
gagttcaaagctttggctcgtgca |
36611240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 348 - 420
Target Start/End: Original strand, 36611239 - 36611311
Alignment:
| Q |
348 |
caatgattatgtgcctgatgagatcattaagagacatctgcttgtgtttatgtttcagctgttgcttgtaatc |
420 |
Q |
| |
|
||||||||||||| |||||||||||||||| | |||| |||||||| |||||||||||||||||||||||||| |
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|
| T |
36611239 |
caatgattatgtgtctgatgagatcattaaaaaacatgtgcttgtgcttatgtttcagctgttgcttgtaatc |
36611311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 409
Target Start/End: Original strand, 2929598 - 2929654
Alignment:
| Q |
353 |
attatgtgcctgatgagatcattaagagacatctgcttgtgtttatgtttcagctgt |
409 |
Q |
| |
|
||||||||| ||||||||||| |||||||||| || ||||| |||||||| |||||| |
|
|
| T |
2929598 |
attatgtgcttgatgagatcaataagagacatatgattgtgattatgttttagctgt |
2929654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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