View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8924_high_8 (Length: 459)
Name: NF8924_high_8
Description: NF8924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8924_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 121 - 443
Target Start/End: Original strand, 23918560 - 23918882
Alignment:
| Q |
121 |
ttgcagataaaagatgcttttgcataccacaagaaaatgatatttctggtagtagcattacagttatacttccaggtggattacatgcttcgccgaacaa |
220 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23918560 |
ttgccgataaaagatgcttttgcataccacaagaaaatgatatttctggtagtagtattacagttatacttccaggtggattacatgcttcgccgaacaa |
23918659 |
T |
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| Q |
221 |
aggagagccttctccgttgattcatcgatggaaattgggcggaatatgtgactgtggaggttgggatgttggttgcaaacttcttgttctatctaaccag |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23918660 |
aggagagccttctccgttgattcatcgatggaaattgggcggaatatgtgactgtggaggttgggatgttggttgcaaacttcttgttctatctaaccag |
23918759 |
T |
|
| Q |
321 |
aacctgacttcaaaacctcaccttgagaaatttcaactttttgttcaggtatacttttgcagtttacttttctgtcaagtcatgtttggataagcaactt |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
23918760 |
aacctgacttcaaaacctcaccttgagaaatttcaactttttgttcaggtatacttttgcagtttacttttctgtcaagtcatgtttggataaccgactt |
23918859 |
T |
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| Q |
421 |
aattagtcatagcataagcattt |
443 |
Q |
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||||||||||||||||||||||| |
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| T |
23918860 |
aattagtcatagcataagcattt |
23918882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 22866056 - 22866160
Alignment:
| Q |
21 |
aaatttgggttatgatgagatatgcaatttacatgtataattgtcgattaatatattacaatcatagtccccggaagacagtaagaaattaaataggtag |
120 |
Q |
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|||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
22866056 |
aaatttgggttatgatgaaatatccaatttacatgtataattgttgattaatatattacaatcatagtccccggaagacggtaagaaattaaataggtag |
22866155 |
T |
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| Q |
121 |
ttgca |
125 |
Q |
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||||| |
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| T |
22866156 |
ttgca |
22866160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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