View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8924_high_9 (Length: 453)
Name: NF8924_high_9
Description: NF8924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8924_high_9 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 11 - 453
Target Start/End: Complemental strand, 43037367 - 43036923
Alignment:
| Q |
11 |
gtgtttcactttggtggcgaactggaatgtagtcctgttattttccagattcaggagaatatcaaacaaccgatttttagctgcaagttcagtgtcgatc |
110 |
Q |
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| T |
43037367 |
gtgtttcactttggtggcgaaccggaatgtagtcctgttattttccagattcaggagaatatcaaacaaccgatttttagctgcaagttcagtgtcgatc |
43037268 |
T |
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| Q |
111 |
gcaattacaaaccccattcccagtaagtcattctttcattttaatttgcttaaacaagtttagttcggtattttaaaattaaaatataaagattata--c |
208 |
Q |
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| T |
43037267 |
gcaattacaaaccccattcccagtaagtcattctttcattttaatttgcttaaacaagtttagttcggtattttaaaattaaaatctaaagattatatac |
43037168 |
T |
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| Q |
209 |
catctgattaaaataccatgactgcatgaaatgaaagtatctactgtatttgtgtttggatattttgcaaaattattggtgggtgggagatcctccttca |
308 |
Q |
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| T |
43037167 |
catctgattaaaataccatgactgcatgaaatgaaagtatctactgtatttgtgtttggatattttgcaaaattattggtgggtgggaggtcctccttca |
43037068 |
T |
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| Q |
309 |
actaaattatttcattttcatgtttctttcctcgttggcagacatcatcactttctgttgttttctttcctttttctgttcaattgaatgaatgaaccat |
408 |
Q |
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| T |
43037067 |
actaaattatttcattttcatgtttctttcctcgttggcagacatcatcactttctgttgttttctttcctttttctgttcaattgaatgaatgaaccat |
43036968 |
T |
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| Q |
409 |
gaaaactggcactcaccacacaccaccaatatttcattttcgtac |
453 |
Q |
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| T |
43036967 |
gaaaactggcactgaccacacaccaccaatatttcattttcgtac |
43036923 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 34190736 - 34190806
Alignment:
| Q |
26 |
ggcgaactggaatgtagtcctgttattttccagattcaggagaatatcaaacaaccgatttttagctgcaa |
96 |
Q |
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||||||| |||||||||||| || |||| |||||||| |||||||| | ||||||| ||||||| ||||| |
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| T |
34190736 |
ggcgaaccggaatgtagtcccgtggtttttcagattcaagagaatattagacaaccggtttttagttgcaa |
34190806 |
T |
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