View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8924_low_11 (Length: 518)
Name: NF8924_low_11
Description: NF8924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8924_low_11 |
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| [»] scaffold1064 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Original strand, 26825037 - 26825536
Alignment:
| Q |
1 |
tcaacatatttggacatcaccaacttcctagctggccttcttgcttgcttgactggtttcttctctaactgtgcaggtgaggctcttatagtagcaccac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26825037 |
tcaacatatttggacatcaccaacttcctagctggccttcttgcttgcttgactggtttcttctctaactgtgcaggtgaggctcttatagtagcaccac |
26825136 |
T |
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| Q |
101 |
ctctagttctagtgggaagaatttatgaagtgtccagttctgctacttccttatgtacaccagaagcaacaattttgatagttttgaccacctttggtgg |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26825137 |
ctctagttctggtgggaagaatttatgaagtgtccagttctgctacttccttatgtacaccagaagcaacaattttgatagttttgaccttctttggtgg |
26825236 |
T |
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| Q |
201 |
cttctgaggtatatcttttacctcctcagaagttgctttcctcttccttcggctatagcggctcacctatcttgtctggaatctgatcccgcttaatggg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26825237 |
cttctgaggtatatcttttacctcctcagaagttgctttcctcttccttcggctatagcggctcacctatcttgtctggaatctgatcccgcttaatggg |
26825336 |
T |
|
| Q |
301 |
aactccagtctccttgtagtatgcagcaatgtactctgcaattactacaagaggatcttctaatgaaattggtggaaaatcatctaagagatcagtagtc |
400 |
Q |
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| T |
26825337 |
aactccagtctccttgtagtatgcagcaatgtactctgcaattactacaagaggatcttctaatgaaattggtggaaaatcatctaagagatcagtagtc |
26825436 |
T |
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| Q |
401 |
catactgatagcttcaaatcatttttagagattatcacatccatcttccaaattattttcatgaaccccaacatcgttccattaaccactttaccagtct |
500 |
Q |
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| T |
26825437 |
ctggctgatagcttcaaatcatttttagagattatcacatccatcttccaaattattttcatgaaccccaacatcgttccattaaccaccttaccagtct |
26825536 |
T |
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Target: scaffold1064 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold1064
Description:
Target: scaffold1064; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 263 - 349
Target Start/End: Original strand, 2599 - 2685
Alignment:
| Q |
263 |
tcacctatcttgtctggaatctgatcccgcttaatgggaactccagtctccttgtagtatgcagcaatgtactctgcaattactaca |
349 |
Q |
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|||||||||||||| |||||||||||| |||| ||||| ||| || ||||||||||||||||| |||||||||||||||||| |
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| T |
2599 |
tcacctatcttgtcaggaatctgatcctaactaatcaaaactctagtttctttgtagtatgcagcaatatactctgcaattactaca |
2685 |
T |
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