View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8924_low_13 (Length: 504)
Name: NF8924_low_13
Description: NF8924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8924_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 10 - 285
Target Start/End: Complemental strand, 9166513 - 9166226
Alignment:
| Q |
10 |
agagaagatgaataataggaaaaagactgctgatggatatcaaagatggatgatgaaagcagcaaataatggtcctgctgcatttggtgaacattggaag |
109 |
Q |
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| T |
9166513 |
agagaagatgaataataggaaaaagactgctgatggatatcaaagatggatgatgaaagcagcaaataatggtcctgctgcatttggtgaacattggaag |
9166414 |
T |
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| Q |
110 |
ttagatgacaaagaaagcaacgcaggtggtgggagaagccgtnnnnnnnctggtgatga------------tccttcctctgataaaggagaggaagatg |
197 |
Q |
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| T |
9166413 |
ttagatgacaaagaaagcaacgcaggtggtgggagaagccgtaaaaaaactggtgatgatgatgatgaaggtccttcctctgataaaggagaggaagatg |
9166314 |
T |
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| Q |
198 |
aagatgaggaagtagataagaagaacagacatggactgaatnnnnnnngtggctatgatgacgatgaaggtccaaggggaggggacct |
285 |
Q |
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| T |
9166313 |
aagatgaggaagtagataagaagaatagacatggactgaataaaaaaagtggctatgatgacgatgaaggtccaaggggaggggacct |
9166226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 309 - 504
Target Start/End: Complemental strand, 9166196 - 9166001
Alignment:
| Q |
309 |
ttgaaaagggtgagtatcttgccttgtttgttttatatttatgaatccatgttgaaggttaccaatttacttttggttagtttcatgcagggaacaannn |
408 |
Q |
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| T |
9166196 |
ttgaaaagggtgagtatcttgccttgtttgttttatatttatgaatccatgttgaaggttaccaatttacttttggttagtttcatgcagggaacaattt |
9166097 |
T |
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| Q |
409 |
nnnnaccatatacattataaaactgctaataggacgatctgagaacacattgtttaaaagttgtctaacacaaaaatctgttaaaagtgaaagacc |
504 |
Q |
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| T |
9166096 |
ttttaccatatacatcataaaactgctaataggacaatctgagaacatattgtttaaaagttatctaacacaaaaatctgttaaaagtgaaagacc |
9166001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 10 - 227
Target Start/End: Complemental strand, 9155096 - 9154867
Alignment:
| Q |
10 |
agagaagatgaataataggaaaaagactgctgatggatatcaaagatggatgatgaaagcagcaaataatggtcctgctgcatttggtgaacattggaag |
109 |
Q |
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| T |
9155096 |
agagaagatgaaaaataggaaaaaaactgctgatggatatcaaagatggatgatgaaagcagcaaacaatgggcctgctgcatttggtgaacatgggaag |
9154997 |
T |
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| Q |
110 |
ttagatgacaaagaaagcaacgcaggtggtgggagaagccgtnnnnnnnctggtgatga------------tccttcctctgataaaggagaggaagatg |
197 |
Q |
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| T |
9154996 |
ttagatgacaaggagagcaacgcagggggtgggagaggccgtaaaaagactggtgatgatgaagatgaaggtccttcctctgataaaggagaggaagatg |
9154897 |
T |
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| Q |
198 |
aagatgaggaagtagataagaagaacagac |
227 |
Q |
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| T |
9154896 |
aagacgaggaagtagataggaagaaaagac |
9154867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 309 - 405
Target Start/End: Complemental strand, 9154791 - 9154691
Alignment:
| Q |
309 |
ttgaaaagggtgagtatcttgccttgtttgttttatattt----atgaatccatgttgaaggttaccaatttacttttggttagtttcatgcagggaaca |
404 |
Q |
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| T |
9154791 |
ttgaaaagggtgagtattttgccttgtttgttttatattttttcatgaatccatgttgaaggttatcagtttacttctagttagttttatgtagtgaaca |
9154692 |
T |
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| Q |
405 |
a |
405 |
Q |
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| T |
9154691 |
a |
9154691 |
T |
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