View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8924_low_15 (Length: 479)
Name: NF8924_low_15
Description: NF8924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8924_low_15 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 6e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 325 - 479
Target Start/End: Original strand, 14007430 - 14007583
Alignment:
| Q |
325 |
catgtaacaatgttagtctttcatcaggattcgatggaagatgaacaaaatcagtacaagcaaaagagggtatatgacttaatgacatcaccaacgtgca |
424 |
Q |
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| T |
14007430 |
catgtaacaatgttagtctttcagcaggattcgatggaagatgaacaaaatcagtacaagcaaaagaggg-atatgacttaatgacatcaccaacgtgca |
14007528 |
T |
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| Q |
425 |
tgtttgttaagaaatgaaaaaatccaagaggaaatgtagagagtagacaaagtat |
479 |
Q |
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| T |
14007529 |
tgtttgttaagaaatgaaaaaatccaagaggaaatgtagagagtagacaaagtat |
14007583 |
T |
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Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 14007301 - 14007436
Alignment:
| Q |
18 |
aattgaacatcagttactcataaatttagtgtgagatacaagatatcattaaggttcttgagaccttctgcatgtgtgg-------tttatattgtatcc |
110 |
Q |
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| T |
14007301 |
aattgaacatcagttactcataaatttagtgtgagatacaag--atcattaaggttcttgagaccttctgcatgtgtggtttataatttatattgtatcc |
14007398 |
T |
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| Q |
111 |
aacaagaatcactattnnnnnnngacatttccatgtaa |
148 |
Q |
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| T |
14007399 |
aacaagaatcactattaaaaaaagacatttccatgtaa |
14007436 |
T |
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