View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8924_low_2 (Length: 762)

Name: NF8924_low_2
Description: NF8924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8924_low_2
NF8924_low_2
[»] chr7 (11 HSPs)
chr7 (152-451)||(25025999-25026291)
chr7 (531-753)||(25026372-25026588)
chr7 (115-152)||(30296344-30296381)
chr7 (116-152)||(27544968-27545004)
chr7 (116-152)||(41029283-41029319)
chr7 (92-152)||(48007537-48007597)
chr7 (114-152)||(46675917-46675955)
chr7 (115-152)||(7872761-7872798)
chr7 (115-152)||(21050235-21050272)
chr7 (119-152)||(30844393-30844426)
chr7 (115-152)||(37230041-37230078)
[»] chr3 (9 HSPs)
chr3 (92-152)||(1149059-1149119)
chr3 (115-149)||(25902794-25902828)
chr3 (116-152)||(33771701-33771737)
chr3 (116-152)||(48315038-48315074)
chr3 (113-151)||(27143058-27143096)
chr3 (114-152)||(27397624-27397662)
chr3 (118-152)||(51250249-51250283)
chr3 (115-152)||(35191830-35191867)
chr3 (115-152)||(36431820-36431857)
[»] chr2 (11 HSPs)
chr2 (116-152)||(21482533-21482569)
chr2 (92-152)||(35685051-35685111)
chr2 (108-149)||(12231891-12231932)
chr2 (120-152)||(36547253-36547285)
chr2 (113-152)||(6141231-6141270)
chr2 (109-144)||(9389487-9389522)
chr2 (115-152)||(15654882-15654919)
chr2 (115-152)||(19179063-19179100)
chr2 (115-152)||(27152364-27152401)
chr2 (115-152)||(35372952-35372989)
chr2 (115-152)||(43117203-43117240)
[»] chr6 (3 HSPs)
chr6 (115-152)||(20381122-20381159)
chr6 (117-152)||(28757039-28757074)
chr6 (119-149)||(13583563-13583593)
[»] chr5 (5 HSPs)
chr5 (116-152)||(3671229-3671265)
chr5 (109-152)||(36623181-36623224)
chr5 (115-152)||(11017187-11017224)
chr5 (115-152)||(22498953-22498990)
chr5 (119-152)||(41417774-41417807)
[»] chr4 (11 HSPs)
chr4 (114-150)||(11166699-11166735)
chr4 (120-152)||(54151643-54151675)
chr4 (117-152)||(20921857-20921892)
chr4 (117-152)||(30380541-30380576)
chr4 (94-149)||(30420856-30420911)
chr4 (117-152)||(38416068-38416103)
chr4 (95-152)||(5360273-5360330)
chr4 (119-152)||(8027414-8027447)
chr4 (115-152)||(20096283-20096320)
chr4 (115-152)||(49949345-49949382)
chr4 (115-152)||(50442760-50442797)
[»] chr1 (9 HSPs)
chr1 (92-152)||(17283962-17284022)
chr1 (117-152)||(9872120-9872155)
chr1 (113-152)||(13794519-13794558)
chr1 (117-152)||(47719122-47719157)
chr1 (115-153)||(10132457-10132495)
chr1 (115-152)||(16580812-16580849)
chr1 (119-152)||(24631850-24631883)
chr1 (115-152)||(28039873-28039910)
chr1 (93-150)||(30937488-30937545)
[»] chr8 (5 HSPs)
chr8 (117-152)||(8984509-8984544)
chr8 (115-152)||(8442500-8442537)
chr8 (115-152)||(17704024-17704061)
chr8 (119-152)||(23816801-23816834)
chr8 (115-152)||(30623304-30623341)
[»] scaffold0262 (1 HSPs)
scaffold0262 (115-148)||(15943-15976)
[»] scaffold0117 (1 HSPs)
scaffold0117 (119-152)||(18304-18337)
[»] scaffold0083 (1 HSPs)
scaffold0083 (119-152)||(45954-45987)


Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 152 - 451
Target Start/End: Original strand, 25025999 - 25026291
Alignment:
Q  152 ataatgttagctgaattgcttatatttgattttcttttaccagaaaaagttaccactagaccattgcaagttgcaacggttatttgattttttaataata 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25025999 ataatgttagctgaattgcttatatttgattttcttttaccagaaaaagttaccactagaccattgcaagttgcaacggttatttgattttttaataata 25026098  T
Q  252 ctcttttctgcaagctcataactcacaattcaatcattgtttaatagttcccctccnnnnnnnnnnnngattgttaatggttgttgtattttggaatatt 351  Q
    ||||||||||||||||      ||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||    
T  25026099 ctcttttctgcaagct------tcacaattcaatcattgtttaatagttcccctccaaaaaaaaaa--gattgttaatggttgttgtattttggaatatt 25026190  T
Q  352 ttcacgttacttttcttgaagataaggaattt-cttcagacatgcttgctaataattcattgtcatagaatttatgtttgtctcgagaagcattatatat 450  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25026191 ttcacgttacttttcttgaagataaggaattttcttcagacatgcttgctaataattcattgtcatagaatttatgtttgtctcgagaagcattatatat 25026290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 531 - 753
Target Start/End: Original strand, 25026372 - 25026588
Alignment:
Q  531 gaaaaagtttggcctctatta-ttgttgcatttaccagtatcttctaaagattcatcattcttgcacttgatctgtctacaatcaatatcaaatagctag 629  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  25026372 gaaaaagtttgccctctattaattgttgcatttaccagtatcttctaaagattcatcattcttgcacttgatctgtctccaatcaatatcaaatagcta- 25026470  T
Q  630 gcgctagggaccacaaccatttgtcaaattgtcgtcataattatcatacttatattaattatttcaaattcctcttcacaaagtaattatttcaaattca 729  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25026471 ------gggaccacaaccatttgtcaaattgtcgtcataattatcatacttatattaattatttcaaattcctcttcacaaagtaattatttcaaattca 25026564  T
Q  730 aatctaattaattaacaccaaact 753  Q
    ||||||||||||||||||||||||    
T  25026565 aatctaattaattaacaccaaact 25026588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 152
Target Start/End: Complemental strand, 30296381 - 30296344
Alignment:
Q  115 agaccttgcatatattatacattatccttaccaactga 152  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  30296381 agaccttgcatatattatacattgtccttaccaactga 30296344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 27545004 - 27544968
Alignment:
Q  116 gaccttgcatatattatacattatccttaccaactga 152  Q
    |||||||||||||||||||||| ||||||||||||||    
T  27545004 gaccttgcatatattatacattgtccttaccaactga 27544968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 41029319 - 41029283
Alignment:
Q  116 gaccttgcatatattatacattatccttaccaactga 152  Q
    |||||||||||||||||||||| ||||||||||||||    
T  41029319 gaccttgcatatattatacattgtccttaccaactga 41029283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 92 - 152
Target Start/End: Original strand, 48007537 - 48007597
Alignment:
Q  92 gtggtgtccagagttaaaactctagaccttgcatatattatacattatccttaccaactga 152  Q
    ||||||||| | ||| |||||| |||||||||||||||||| |||| || |||||||||||    
T  48007537 gtggtgtcctgggttcaaactccagaccttgcatatattatgcattgtcattaccaactga 48007597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 152
Target Start/End: Complemental strand, 46675955 - 46675917
Alignment:
Q  114 tagaccttgcatatattatacattatccttaccaactga 152  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  46675955 tagaccttgcatattttatacattgtccttaccaactga 46675917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 7872761 - 7872798
Alignment:
Q  115 agaccttgcatatattatacattatccttaccaactga 152  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  7872761 agaccttgcatatattatgcattgtccttaccaactga 7872798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 21050235 - 21050272
Alignment:
Q  115 agaccttgcatatattatacattatccttaccaactga 152  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  21050235 agaccttgcatatattatgcattgtccttaccaactga 21050272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 152
Target Start/End: Original strand, 30844393 - 30844426
Alignment:
Q  119 cttgcatatattatacattatccttaccaactga 152  Q
    ||||||||||||||| ||||||||||||||||||    
T  30844393 cttgcatatattatatattatccttaccaactga 30844426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 37230041 - 37230078
Alignment:
Q  115 agaccttgcatatattatacattatccttaccaactga 152  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  37230041 agaccttgcatatattatgcattttccttaccaactga 37230078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 152
Target Start/End: Original strand, 1149059 - 1149119
Alignment:
Q  92 gtggtgtccagagttaaaactctagaccttgcatatattatacattatccttaccaactga 152  Q
    ||||||||||| |||  ||| |||||||||||||||||||| |||| ||||||||||||||    
T  1149059 gtggtgtccagggttcgaaccctagaccttgcatatattatgcattgtccttaccaactga 1149119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 149
Target Start/End: Complemental strand, 25902828 - 25902794
Alignment:
Q  115 agaccttgcatatattatacattatccttaccaac 149  Q
    |||||||||||||||||||||||||||||||||||    
T  25902828 agaccttgcatatattatacattatccttaccaac 25902794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 33771737 - 33771701
Alignment:
Q  116 gaccttgcatatattatacattatccttaccaactga 152  Q
    |||||||||||||||||||||| ||||||||||||||    
T  33771737 gaccttgcatatattatacattgtccttaccaactga 33771701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 48315038 - 48315074
Alignment:
Q  116 gaccttgcatatattatacattatccttaccaactga 152  Q
    ||||||||||||||||| |||||||||||||||||||    
T  48315038 gaccttgcatatattatgcattatccttaccaactga 48315074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 151
Target Start/End: Complemental strand, 27143096 - 27143058
Alignment:
Q  113 ctagaccttgcatatattatacattatccttaccaactg 151  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  27143096 ctagaccttacatatattatacattgtccttaccaactg 27143058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 152
Target Start/End: Original strand, 27397624 - 27397662
Alignment:
Q  114 tagaccttgcatatattatacattatccttaccaactga 152  Q
    |||||||||||||||||||||||| ||| ||||||||||    
T  27397624 tagaccttgcatatattatacattgtccataccaactga 27397662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 51250249 - 51250283
Alignment:
Q  118 ccttgcatatattatacattatccttaccaactga 152  Q
    |||||||||||||||||||| ||||||||||||||    
T  51250249 ccttgcatatattatacattgtccttaccaactga 51250283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 35191830 - 35191867
Alignment:
Q  115 agaccttgcatatattatacattatccttaccaactga 152  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  35191830 agaccttgcatatattatgcattgtccttaccaactga 35191867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 152
Target Start/End: Complemental strand, 36431857 - 36431820
Alignment:
Q  115 agaccttgcatatattatacattatccttaccaactga 152  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  36431857 agacattgcatatattatacattatccctaccaactga 36431820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 21482533 - 21482569
Alignment:
Q  116 gaccttgcatatattatacattatccttaccaactga 152  Q
    |||||||||||||||||||||||||||||||||||||    
T  21482533 gaccttgcatatattatacattatccttaccaactga 21482569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 152
Target Start/End: Original strand, 35685051 - 35685111
Alignment:
Q  92 gtggtgtccagagttaaaactctagaccttgcatatattatacattatccttaccaactga 152  Q
    |||||||||| ||||  ||| |||||||||||||||||||| |||| ||||||||||||||    
T  35685051 gtggtgtccaaagttcgaaccctagaccttgcatatattatgcattgtccttaccaactga 35685111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 12231932 - 12231891
Alignment:
Q  108 aaactctagaccttgcatatattatacattatccttaccaac 149  Q
    ||||||| ||||||||||||||||| ||||||||||||||||    
T  12231932 aaactctggaccttgcatatattatgcattatccttaccaac 12231891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 36547253 - 36547285
Alignment:
Q  120 ttgcatatattatacattatccttaccaactga 152  Q
    |||||||||||||||||||||||||||||||||    
T  36547253 ttgcatatattatacattatccttaccaactga 36547285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 152
Target Start/End: Complemental strand, 6141270 - 6141231
Alignment:
Q  113 ctagaccttgcatatattatacattatccttaccaactga 152  Q
    |||||||||||||||||||| |||| ||||||||||||||    
T  6141270 ctagaccttgcatatattatgcattgtccttaccaactga 6141231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 144
Target Start/End: Complemental strand, 9389522 - 9389487
Alignment:
Q  109 aactctagaccttgcatatattatacattatcctta 144  Q
    ||||| ||||||||||||||||||||||||||||||    
T  9389522 aactccagaccttgcatatattatacattatcctta 9389487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 15654882 - 15654919
Alignment:
Q  115 agaccttgcatatattatacattatccttaccaactga 152  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  15654882 agaccttgcatattttatgcattatccttaccaactga 15654919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 19179063 - 19179100
Alignment:
Q  115 agaccttgcatatattatacattatccttaccaactga 152  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  19179063 agaccttgcatatattatgcattgtccttaccaactga 19179100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 152
Target Start/End: Complemental strand, 27152401 - 27152364
Alignment:
Q  115 agaccttgcatatattatacattatccttaccaactga 152  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  27152401 agaccttgcatatattatgcattatccctaccaactga 27152364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 35372952 - 35372989
Alignment:
Q  115 agaccttgcatatattatacattatccttaccaactga 152  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  35372952 agaccttgcatatattatatattgtccttaccaactga 35372989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 43117203 - 43117240
Alignment:
Q  115 agaccttgcatatattatacattatccttaccaactga 152  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  43117203 agaccttgcatatattatgcattgtccttaccaactga 43117240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 20381122 - 20381159
Alignment:
Q  115 agaccttgcatatattatacattatccttaccaactga 152  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  20381122 agaccttgcatatattatacattatccataccaactga 20381159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 152
Target Start/End: Original strand, 28757039 - 28757074
Alignment:
Q  117 accttgcatatattatacattatccttaccaactga 152  Q
    ||||||||||||||||||||| ||||||||||||||    
T  28757039 accttgcatatattatacattgtccttaccaactga 28757074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 149
Target Start/End: Complemental strand, 13583593 - 13583563
Alignment:
Q  119 cttgcatatattatacattatccttaccaac 149  Q
    |||||||||||||||||||||||||||||||    
T  13583593 cttgcatatattatacattatccttaccaac 13583563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 3671265 - 3671229
Alignment:
Q  116 gaccttgcatatattatacattatccttaccaactga 152  Q
    ||||||||||||||||||||||||||||| |||||||    
T  3671265 gaccttgcatatattatacattatccttatcaactga 3671229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 152
Target Start/End: Original strand, 36623181 - 36623224
Alignment:
Q  109 aactctagaccttgcatatattatacattatccttaccaactga 152  Q
    |||||||||||||||||||||||| |||||| |||| |||||||    
T  36623181 aactctagaccttgcatatattatgcattattcttatcaactga 36623224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 152
Target Start/End: Complemental strand, 11017224 - 11017187
Alignment:
Q  115 agaccttgcatatattatacattatccttaccaactga 152  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  11017224 agaccttgcatatattatgcattatccctaccaactga 11017187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 152
Target Start/End: Complemental strand, 22498990 - 22498953
Alignment:
Q  115 agaccttgcatatattatacattatccttaccaactga 152  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  22498990 agaccttgcatatattatgcattgtccttaccaactga 22498953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 152
Target Start/End: Complemental strand, 41417807 - 41417774
Alignment:
Q  119 cttgcatatattatacattatccttaccaactga 152  Q
    ||||||||||||||||||||||| ||||||||||    
T  41417807 cttgcatatattatacattatccctaccaactga 41417774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 114 - 150
Target Start/End: Complemental strand, 11166735 - 11166699
Alignment:
Q  114 tagaccttgcatatattatacattatccttaccaact 150  Q
    |||||||||||||||||||||||| ||||||||||||    
T  11166735 tagaccttgcatatattatacattgtccttaccaact 11166699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 54151643 - 54151675
Alignment:
Q  120 ttgcatatattatacattatccttaccaactga 152  Q
    |||||||||||||||||||||||||||||||||    
T  54151643 ttgcatatattatacattatccttaccaactga 54151675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 152
Target Start/End: Original strand, 20921857 - 20921892
Alignment:
Q  117 accttgcatatattatacattatccttaccaactga 152  Q
    ||||||||||||||||||||||||||| ||||||||    
T  20921857 accttgcatatattatacattatccttgccaactga 20921892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 152
Target Start/End: Complemental strand, 30380576 - 30380541
Alignment:
Q  117 accttgcatatattatacattatccttaccaactga 152  Q
    ||||||||||||||||||||| ||||||||||||||    
T  30380576 accttgcatatattatacattgtccttaccaactga 30380541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 149
Target Start/End: Complemental strand, 30420911 - 30420856
Alignment:
Q  94 ggtgtccagagttaaaactctagaccttgcatatattatacattatccttaccaac 149  Q
    ||||||||| |||  ||| ||||||||| ||||||||||||||| |||||||||||    
T  30420911 ggtgtccagggttcgaaccctagaccttacatatattatacattgtccttaccaac 30420856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 152
Target Start/End: Complemental strand, 38416103 - 38416068
Alignment:
Q  117 accttgcatatattatacattatccttaccaactga 152  Q
    |||||||||||||||| |||||||||||||||||||    
T  38416103 accttgcatatattatgcattatccttaccaactga 38416068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 152
Target Start/End: Original strand, 5360273 - 5360330
Alignment:
Q  95 gtgtccagagttaaaactctagaccttgcatatattatacattatccttaccaactga 152  Q
    ||||||||||||  ||| | |||||||||||| ||||| ||| |||||||||||||||    
T  5360273 gtgtccagagtttgaacaccagaccttgcatacattatgcatgatccttaccaactga 5360330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 152
Target Start/End: Original strand, 8027414 - 8027447
Alignment:
Q  119 cttgcatatattatacattatccttaccaactga 152  Q
    |||||||||||||| |||||||||||||||||||    
T  8027414 cttgcatatattatgcattatccttaccaactga 8027447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 20096283 - 20096320
Alignment:
Q  115 agaccttgcatatattatacattatccttaccaactga 152  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  20096283 agaccttgcatatattatgcattatccctaccaactga 20096320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 152
Target Start/End: Complemental strand, 49949382 - 49949345
Alignment:
Q  115 agaccttgcatatattatacattatccttaccaactga 152  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  49949382 agaccttgcatatattatgcattgtccttaccaactga 49949345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 50442760 - 50442797
Alignment:
Q  115 agaccttgcatatattatacattatccttaccaactga 152  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  50442760 agaccttgcatatattatgcattatccctaccaactga 50442797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 92 - 152
Target Start/End: Complemental strand, 17284022 - 17283962
Alignment:
Q  92 gtggtgtccagagttaaaactctagaccttgcatatattatacattatccttaccaactga 152  Q
    ||||||||||| |||  ||| || ||||||||||||||||| |||| ||||||||||||||    
T  17284022 gtggtgtccagggttcgaaccctggaccttgcatatattatgcattgtccttaccaactga 17283962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 152
Target Start/End: Original strand, 9872120 - 9872155
Alignment:
Q  117 accttgcatatattatacattatccttaccaactga 152  Q
    |||||||||||||||| |||||||||||||||||||    
T  9872120 accttgcatatattatgcattatccttaccaactga 9872155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 152
Target Start/End: Original strand, 13794519 - 13794558
Alignment:
Q  113 ctagaccttgcatatattatacattatccttaccaactga 152  Q
    |||||||||||||||||||| ||||||||||| |||||||    
T  13794519 ctagaccttgcatatattatgcattatccttatcaactga 13794558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 152
Target Start/End: Original strand, 47719122 - 47719157
Alignment:
Q  117 accttgcatatattatacattatccttaccaactga 152  Q
    |||||||||||||||| |||||||||||||||||||    
T  47719122 accttgcatatattatgcattatccttaccaactga 47719157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 153
Target Start/End: Original strand, 10132457 - 10132495
Alignment:
Q  115 agaccttgcatatattatacattatccttaccaactgat 153  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  10132457 agaccttgcatatattatgcattgtccttaccaactgat 10132495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 16580812 - 16580849
Alignment:
Q  115 agaccttgcatatattatacattatccttaccaactga 152  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  16580812 agaccttgcatatattatacattgtccataccaactga 16580849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 152
Target Start/End: Complemental strand, 24631883 - 24631850
Alignment:
Q  119 cttgcatatattatacattatccttaccaactga 152  Q
    |||||||||||||| |||||||||||||||||||    
T  24631883 cttgcatatattatgcattatccttaccaactga 24631850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 28039873 - 28039910
Alignment:
Q  115 agaccttgcatatattatacattatccttaccaactga 152  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  28039873 agaccttgcatatattatgcattgtccttaccaactga 28039910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 150
Target Start/End: Complemental strand, 30937545 - 30937488
Alignment:
Q  93 tggtgtccagagttaaaactctagaccttgcatatattatacattatccttaccaact 150  Q
    |||||||| |||||  ||| | ||||||||||||||||||||||| |||||| |||||    
T  30937545 tggtgtccggagttcgaaccccagaccttgcatatattatacattgtccttatcaact 30937488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 152
Target Start/End: Original strand, 8984509 - 8984544
Alignment:
Q  117 accttgcatatattatacattatccttaccaactga 152  Q
    ||||||||||||||||||||||||| ||||||||||    
T  8984509 accttgcatatattatacattatccataccaactga 8984544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 8442500 - 8442537
Alignment:
Q  115 agaccttgcatatattatacattatccttaccaactga 152  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  8442500 agaccttgcatatattatgcattgtccttaccaactga 8442537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 152
Target Start/End: Complemental strand, 17704061 - 17704024
Alignment:
Q  115 agaccttgcatatattatacattatccttaccaactga 152  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  17704061 agaccttgcatatattatgcattgtccttaccaactga 17704024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 152
Target Start/End: Complemental strand, 23816834 - 23816801
Alignment:
Q  119 cttgcatatattatacattatccttaccaactga 152  Q
    |||||||||||||| |||||||||||||||||||    
T  23816834 cttgcatatattatgcattatccttaccaactga 23816801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 152
Target Start/End: Complemental strand, 30623341 - 30623304
Alignment:
Q  115 agaccttgcatatattatacattatccttaccaactga 152  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  30623341 agaccttgcatatattatgcattgtccttaccaactga 30623304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 15943 - 15976
Alignment:
Q  115 agaccttgcatatattatacattatccttaccaa 148  Q
    ||||||||||||||||||||||| ||||||||||    
T  15943 agaccttgcatatattatacattgtccttaccaa 15976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 152
Target Start/End: Complemental strand, 18337 - 18304
Alignment:
Q  119 cttgcatatattatacattatccttaccaactga 152  Q
    ||||||||||||||||||| ||||||||||||||    
T  18337 cttgcatatattatacattgtccttaccaactga 18304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 152
Target Start/End: Complemental strand, 45987 - 45954
Alignment:
Q  119 cttgcatatattatacattatccttaccaactga 152  Q
    ||||||||||||||||||||| ||||||||||||    
T  45987 cttgcatatattatacattattcttaccaactga 45954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University