View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8924_low_20 (Length: 464)
Name: NF8924_low_20
Description: NF8924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8924_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 19 - 451
Target Start/End: Original strand, 3278180 - 3278609
Alignment:
| Q |
19 |
atactaacctgttctggggttctcatataatgttggtcaataaatacaggataatttgtttgatttatgattatatcctcaaagatgatatgtttggcgt |
118 |
Q |
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| T |
3278180 |
atactaacctgttctggggttctcatataatgttggtcaataaatacaggataatttgtttgatttatgattatatcctcaaagatgatatgtttggcgt |
3278279 |
T |
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| Q |
119 |
atccttttccacccttgaaaaatatataggattttgttaattaattaacacnnnnnnnntacatagggttttattatatgatttatttgattaccatatt |
218 |
Q |
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| T |
3278280 |
atccttttccacccttgaaaaatatataggattttgttaattaattaaca-aaaaaaaatacatagggtt--attatatgatttatttgattaccatatt |
3278376 |
T |
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| Q |
219 |
atagcattaccggccatgtcttgattttaacggcactatcagctccattgaatgtgcaattcttgacactaaaatgttgtacaaattcttctgaaccatg |
318 |
Q |
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| T |
3278377 |
atagcattaccggccatgtcttgattttaacggcactatcagctccattgaatgtgcaattcttgacactaaaatgttgtacaaattcttctgaaccatg |
3278476 |
T |
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| Q |
319 |
tcctcctagactccctacactgaataaagaagacaaaaatatatatcaattatggcctatttcaatgagtttcgctttgtgcacaacttctaattcaacc |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3278477 |
tcctcctagactccctacactgaataaagaagacaaaaatacatatcaattatggcctatttcaatgagtttcgctttgtgcacaactcctaattcaacc |
3278576 |
T |
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| Q |
419 |
aataaaaatattaaaaaatttcgacaaacacca |
451 |
Q |
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| T |
3278577 |
aataaaaatattaaaaaatttcgacaaacacca |
3278609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 23 - 340
Target Start/End: Original strand, 3272444 - 3272767
Alignment:
| Q |
23 |
taacctgttctggggttctcatataatgttggtcaataaatacaggataatttgtttgatttatgattatatcctcaaagatgatatgtttggcgtatcc |
122 |
Q |
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|||||||||||||||| |||||||||||||||| ||| ||||||| ||||||||||||| || ||||||||||| |||||||||| |||||||||||| |
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| T |
3272444 |
taacctgttctggggtcttcatataatgttggtcgatatatacagggtaatttgtttgatatagtattatatcctcgaagatgatatctttggcgtatcc |
3272543 |
T |
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| Q |
123 |
ttttccaccctt-gaaaaatatataggat-tttgttaatt--aattaacacnnnnnnnntacatagg-----gttttattatatgatttatttgattacc |
213 |
Q |
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|||||||||||| ||||| |||| |||| || ||||||| | ||||||| |||||||| || ||||||||| ||| |||||| | |
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| T |
3272544 |
ttttccacccttaaaaaaaaatattggatattcgttaattgaatttaacac---aaaaatacataggataatgtattattatatagttttattgatttca |
3272640 |
T |
|
| Q |
214 |
atattatagcattaccggccatgtcttgattttaacggcactatcagctccattgaatgtgcaattcttgacactaaaatgttgtacaaattcttctgaa |
313 |
Q |
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| | | || ||||||||||||||| ||||| ||||| ||||||||| |||||||||||||||||||||||| || ||||||| |||||||||| |||| |
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| T |
3272641 |
aaactgtatcattaccggccatgttttgatcttaacagcactatcacctccattgaatgtgcaattcttgatccttaaatgttctacaaattctggtgaa |
3272740 |
T |
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| Q |
314 |
ccatgtcctcctagactccctacactg |
340 |
Q |
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||||| ||||||||||||||||||||| |
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| T |
3272741 |
ccatgccctcctagactccctacactg |
3272767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 220 - 285
Target Start/End: Original strand, 2448305 - 2448370
Alignment:
| Q |
220 |
tagcattaccggccatgtcttgattttaacggcactatcagctccattgaatgtgcaattcttgac |
285 |
Q |
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||||||||| ||||||||||||||| | | |||||||||||||||||||||||||||||| |||| |
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| T |
2448305 |
tagcattactggccatgtcttgattcttgctgcactatcagctccattgaatgtgcaattcctgac |
2448370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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