View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8924_low_23 (Length: 456)
Name: NF8924_low_23
Description: NF8924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8924_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 23 - 166
Target Start/End: Original strand, 43025905 - 43026048
Alignment:
| Q |
23 |
ggcatatgcaagcataaatattttattgagtgatgtaagtgcttacatgattaaactgttgataaaaaccgagaattatcttttgacaataaatatgttg |
122 |
Q |
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| T |
43025905 |
ggcatatgcaagcataaatattttattgagtgatgtaagtgcttacatgattaaactgttgataaaaaccgagaattatcttttgacaataaatatgttg |
43026004 |
T |
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| Q |
123 |
ttgaatatcatatcaattacaactttgtcttatttatctcccct |
166 |
Q |
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| T |
43026005 |
ttgaatatcatatcaattacaactttgtcttatttatctcccct |
43026048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 338 - 439
Target Start/End: Original strand, 43026176 - 43026277
Alignment:
| Q |
338 |
caaatggtggggcacaatgtgagtaattagtgttgtaagctctaggataagataccagttcaattccctattgataaaaaagtatatggtgtctgatctg |
437 |
Q |
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| T |
43026176 |
caaatggtggtgcacaatgtgagtaattagtgttgtatgctctaggataagataccagttcaatttcctattgataaaaaagtatatggtgtctgatctg |
43026275 |
T |
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| Q |
438 |
tg |
439 |
Q |
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|| |
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| T |
43026276 |
tg |
43026277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 243 - 293
Target Start/End: Original strand, 43026118 - 43026169
Alignment:
| Q |
243 |
acaaatgtt-gacgattgttttgaaacattcatttttataatttataccata |
293 |
Q |
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| T |
43026118 |
acaaatgttagacgattgttttgaaacattcatttttataatttataccata |
43026169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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