View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8924_low_26 (Length: 426)
Name: NF8924_low_26
Description: NF8924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8924_low_26 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 21 - 306
Target Start/End: Complemental strand, 26901398 - 26901113
Alignment:
| Q |
21 |
actaattgtagattttgttgtaatgaatggggcattggtttggagattgaagatgctaagagggataagattgagggtcttgtgagggaattgatggatg |
120 |
Q |
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| T |
26901398 |
actaattgtagattttgttgtaatgaatgggggattggtttggaaattgaagatgctaagagggataaaattgagattcttgtgaaggagttaatggaag |
26901299 |
T |
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| Q |
121 |
gagaaaagggtaaagaaatgaaagagaaagctttgaggttgaaagaattggcacattataatgcttatggggcatttggatcttcattggtgaatttgga |
220 |
Q |
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| T |
26901298 |
gagaaaagggtaaagaaatgaaagagaaagctttgaggttgaaagaattggcacatgataatgcttatggggcatttggatcttcattggtgaatttgga |
26901199 |
T |
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| Q |
221 |
caacatgattcgtcacgtgctattattgtcataaatttccaaaatgttactttcctagtgtgttgttatgtgtctccgtgggttct |
306 |
Q |
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| T |
26901198 |
caacatgattcatcacgtgctattattgtcataaatttccaaaatgttactttcgtagtgtgttgttatgtgtctatgtgggttct |
26901113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 26672112 - 26671978
Alignment:
| Q |
21 |
actaattgtagattttgttgtaatgaatggggcattggtttggagattgaagatgctaagagggataagattgagggtcttgtgagggaattgatggatg |
120 |
Q |
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| T |
26672112 |
actaattgtagattttgttgtaatgaatgggggattggtttggagattgaagatgctaagagggacaaaatagagattcttgtgaaggagttaatggaag |
26672013 |
T |
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| Q |
121 |
gagaaaagggtaaagaaatgaaagagaaagctttg |
155 |
Q |
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| T |
26672012 |
gagaaaagggtaaagagatgaaagaaaaagctttg |
26671978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 26943710 - 26943576
Alignment:
| Q |
21 |
actaattgtagattttgttgtaatgaatggggcattggtttggagattgaagatgctaagagggataagattgagggtcttgtgagggaattgatggatg |
120 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || || ||| |||||||| ||| || ||||| | |
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| T |
26943710 |
actaattgtagattttgttgtaatgaatgggggattggtttggagattgaagatgctaagagggacaaaatagagattcttgtgaaggagttaatggaag |
26943611 |
T |
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| Q |
121 |
gagaaaagggtaaagaaatgaaagagaaagctttg |
155 |
Q |
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| T |
26943610 |
gagaaaagggtaaagagatgaaagaaaaagctttg |
26943576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 345 - 411
Target Start/End: Complemental strand, 26901128 - 26901058
Alignment:
| Q |
345 |
tgtctctgtgggttctattctattaattctattggtatgg----ataggtatgcttctaggtgggaagggt |
411 |
Q |
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| T |
26901128 |
tgtctatgtgggttctattctattaattctattggtatggatatatatggatgcttctaggtgggaagggt |
26901058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 21 - 155
Target Start/End: Original strand, 91530 - 91664
Alignment:
| Q |
21 |
actaattgtagattttgttgtaatgaatggggcattggtttggagattgaagatgctaagagggataagattgagggtcttgtgagggaattgatggatg |
120 |
Q |
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| T |
91530 |
actaattgtaggttttgttgtaatgagtgggagattggtttggagattgaagatgctaagagggacaaaattgagagccttgtgaaggagttgttggatg |
91629 |
T |
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| Q |
121 |
gagaaaagggtaaagaaatgaaagagaaagctttg |
155 |
Q |
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| T |
91630 |
gtgaaaagggtaaagagatgaaagcaaaagctttg |
91664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 340
Target Start/End: Original strand, 10583101 - 10583133
Alignment:
| Q |
308 |
tgtatcgtttcaattttattggatgtccccgaa |
340 |
Q |
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| T |
10583101 |
tgtatcgtttcaattttatcggatgtccccgaa |
10583133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 340
Target Start/End: Complemental strand, 6752104 - 6752068
Alignment:
| Q |
304 |
tctttgtatcgtttcaattttattggatgtccccgaa |
340 |
Q |
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| T |
6752104 |
tctttgtatcgtttcaattttacgggatgtccccgaa |
6752068 |
T |
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