View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8924_low_28 (Length: 417)
Name: NF8924_low_28
Description: NF8924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8924_low_28 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 144 - 401
Target Start/End: Original strand, 8069973 - 8070230
Alignment:
| Q |
144 |
agaactcaatactcctcctattgtccaaatccaacaaattgcaaaaactccaacactgtttttcctcttaccaatgaagaaaatagatccatcagattga |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8069973 |
agaactcaatactcctcctattgtccaaatccaacaaattgcaaaaaccccaacactgtttttcctcttaccaatgaagaaaatagatccatcagattga |
8070072 |
T |
|
| Q |
244 |
ttattactttaaaagatgtcttattgaacatcacattataattactatcacacagttgacttatatgttcatatgattatgtttgagtctatctactaat |
343 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8070073 |
tgattactttaaaagatgtcttattgaacatcacattataattactatcacacagttgacttatatgttcatatgattatgtttgagtctatctactaat |
8070172 |
T |
|
| Q |
344 |
aatatattacgaatggatgggaaatataagttaccaatagttcttgaaccaataatct |
401 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||||| ||||| |||| |
|
|
| T |
8070173 |
aatatattagtaatggatgggaaatataagttactaatagttcttgatccaatgatct |
8070230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University