View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8924_low_30 (Length: 352)
Name: NF8924_low_30
Description: NF8924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8924_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 342
Target Start/End: Complemental strand, 52712365 - 52712030
Alignment:
| Q |
20 |
tcaatgtgcaacctgcagtgattatttatttgaagtttaaaaaatctttaatattattattattcatgatccaacgttataa------------------ |
101 |
Q |
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| T |
52712365 |
tcaatgtgcaacctgcagtgatt---tatttgaagtttaaaaaatctttaatattattatt---catgatccaacgttataattgattgataaagacaaa |
52712272 |
T |
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| Q |
102 |
-aagatagaagattttaatacccaaatgatataagagaccaaacaagtccgataagacttgcgtatgtgttaggatttctgatgagttttctcccgacca |
200 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52712271 |
aaagatagaagatttttatacccaaatgatataagagaccaaacaagtccgataagacttgcgtatgtgttaggatttctgatgagttttctccaaacca |
52712172 |
T |
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| Q |
201 |
tgacgaggatgagttttgtcatcacacttgctggtggcatctgtttgtttttgtttacatccccaactccttccaagtccaccttcttctggctaatata |
300 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52712171 |
tgaagaggatgagttttgtcatcacacttgctggtggcatctgtttgtttttgtttacatccccaactccttccaagtccaccttcttctggctaatata |
52712072 |
T |
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| Q |
301 |
tggagactttgtttcttcctcaatttcaaactctctttctct |
342 |
Q |
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| T |
52712071 |
tggagactttgtttcttcctcaatttcaaagtctctttctct |
52712030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 117 - 342
Target Start/End: Complemental strand, 52717852 - 52717627
Alignment:
| Q |
117 |
aatacccaaatgatataagagaccaaacaagtccgataagacttgcgtatgtgttaggatttctgatgagttttctcccgaccatgacgaggatgagttt |
216 |
Q |
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|||||| |||||||| |||||||||||||||||| |||||||||| ||| || ||||||||||||||||||||||||| ||||||| |||||| ||| | |
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| T |
52717852 |
aatacctaaatgatacaagagaccaaacaagtcctataagacttgagtaggtattaggatttctgatgagttttctccaaaccatgatgaggattagtct |
52717753 |
T |
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| Q |
217 |
tgtcatcacacttgctggtggcatctgtttgtttttgtttacatccccaactccttccaagtccaccttcttctggctaatatatggagactttgtttct |
316 |
Q |
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|||||| ||||||||||||||||||||| | |||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||| | || |
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| T |
52717752 |
tgtcatgacacttgctggtggcatctgtgtatttttgcttacatcccctcctccttccaagtccatcttcttctggctaatatatggagactttactgct |
52717653 |
T |
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| Q |
317 |
tcctcaatttcaaactctctttctct |
342 |
Q |
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||||||||||||| || |||||||| |
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| T |
52717652 |
tcctcaatttcaacatccctttctct |
52717627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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