View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8924_low_32 (Length: 350)
Name: NF8924_low_32
Description: NF8924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8924_low_32 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 160362 - 160699
Alignment:
| Q |
1 |
aaataagaaaatgttatgcagagaaatttcccgacataagcaaagagaaatttgtggaaacaattttgttggatgctgttttcatcatggaacttttgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
160362 |
aaataagaaaatgttatgcagagaaatttcccaacataagcaaagagaaatttgtggaaacaattttgttggatgctgttttcatcatggaacttttgtt |
160461 |
T |
|
| Q |
101 |
gagaaacagttcatggaagtcggatacatcaaaacatgaacatgaatacaagcaatccaagtcatttagatggaaacatagtgatgattacattctaaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
160462 |
gagaaacagttcatggaagtcggatacatcaaaacatgaacatgaatacaagcaatccaagtcatttagatggaaacatagtgatgattacattctaaca |
160561 |
T |
|
| Q |
201 |
caagcttggctcagcaaaagcatcacaagggacttgattttgttggaaaatcagataccnnnnnnngtattgaagcatctttatgacactgtcgtcccga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
160562 |
caagcttggctcagcaaaagcatcacaagggacttgattttgttggaaaatcagatacctttttttgtattgaagcatctttatgacactgtcgtcccga |
160661 |
T |
|
| Q |
301 |
acgacgacaaaaaaccaaatcatgaagattttcttgat |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
160662 |
acgacgacaaaaaaccaaatcatgaagattttcttgat |
160699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 151927 - 152240
Alignment:
| Q |
1 |
aaataagaaaatgttatgcagagaaatttcccgacataagcaaagagaaatttgtggaaacaattttgttggatgctgttttcatcatggaacttttgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
151927 |
aaataagaaaatgttatgcagagaaatttcccaacataagcaaagagaaatttgtggaaacaattttgttggatgctgttttcatcatggaacttttgtt |
152026 |
T |
|
| Q |
101 |
gagaaacagttcatggaagtcggatacatcaaaacatgaacatgaatacaagcaatccaagtcatttagatggaaacatagtgatgattacattctaaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
152027 |
gagaaacagttcatggaagtcggatacatcaaaacatgaacatgaatacaagcaatccaagtcatttagatggaaacatagtgatgattacattctaaca |
152126 |
T |
|
| Q |
201 |
caagcttggctcagcaaaagcatcacaagggacttgattttgttggaaaatcagataccnnnnnnngtattgaagcatctttatgacactgtcgtcccga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||| | ||||||||||| | |
|
|
| T |
152127 |
caagcttggctcagcaaaagcatcacaagggacttgattttgttggaaaatcagataccattttttgtattgatggatctttaccaaactgtcgtcccta |
152226 |
T |
|
| Q |
301 |
acgacgacaaaaaa |
314 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
152227 |
acggcgacaaaaaa |
152240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University