View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8924_low_34 (Length: 347)
Name: NF8924_low_34
Description: NF8924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8924_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 55412710 - 55413046
Alignment:
| Q |
1 |
tccaaaaccaaaatattgaacaatatagtagaacacatagagaatcatgccattatctcaagtaaaaggacacttaccaatagacacgttccttgtcacc |
100 |
Q |
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| T |
55412710 |
tccaaaaccaaaatattaaacaatatagtagaacacatagagaatcatgccattatctcaagtaaaaggacacttaccaatagacacgttccttgtcacc |
55412809 |
T |
|
| Q |
101 |
acaaagactttggggtatctcaatctcagaagattttcctaacagaagagattattattgttgacttctacaatgcaataacnnnnnnnnnnnntatagg |
200 |
Q |
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| T |
55412810 |
acaaagactttggggtatctcaatctcagaagattttcctaacagaagagattattattgttgacttctacaatgcaataacaaaaacaaaaaatatagg |
55412909 |
T |
|
| Q |
201 |
tgaagattaataccttgtatttttgcttctatatcttcctctacacattgttcatgacaaatttgtttcagatatggaaggagtaagttgatcatgtaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55412910 |
tgaagattaataccttgtatttttgcttctatatcttcctctacacattgttcatgacaaatttgtttcagatatggaaggagtaagttgatcatgtaat |
55413009 |
T |
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| Q |
301 |
gcagatactgagctttttcataattggtgatgtccat |
337 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
55413010 |
gcagatactgagctttttcataattggtgatgtccat |
55413046 |
T |
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