View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8924_low_36 (Length: 337)
Name: NF8924_low_36
Description: NF8924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8924_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 23 - 321
Target Start/End: Complemental strand, 627600 - 627296
Alignment:
| Q |
23 |
tttctctcaattcttcatccacaataaccttttctatcaatctcaaaaactccatgcacaatatgttgtgaagttatatccaaattaagcagtaacattt |
122 |
Q |
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| T |
627600 |
tttctctcaattcttcatccacaataaccttttctatcaatctcaaaaactccatgcacaatatgttgtgaagttatatccaaattaagcagtaacattt |
627501 |
T |
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| Q |
123 |
ctctcatcaggtttgtattgtaccttaattagtacatgcatac------atatatttatgtcatagttttagttaattagttattataaggtttttgata |
216 |
Q |
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| T |
627500 |
ctctcatcaggtttgtattgtaccttaattagtacatgcatacatacatatatatttatgtcatagttttagttaatttgttattataaggtttttgata |
627401 |
T |
|
| Q |
217 |
ttgcaataatccttcagttgctgatgggaagaaaaggaggaagttggttctcttctgtcaagaaagttttcaagtcatcttcatcttctaaggacacgtc |
316 |
Q |
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| T |
627400 |
ttgtaataatccttcagttgctgatgggaagaaaaggaggaagttggttctcttctgtcaagaaagttttcaagtcttcttcatcttctaaggacacgtc |
627301 |
T |
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| Q |
317 |
agtgc |
321 |
Q |
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||||| |
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| T |
627300 |
agtgc |
627296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 627633 - 627604
Alignment:
| Q |
1 |
actcttttcacactctctaacttttctctc |
30 |
Q |
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| T |
627633 |
actcttttcacactctctaacttttctctc |
627604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 298
Target Start/End: Original strand, 41669864 - 41669913
Alignment:
| Q |
249 |
aaaggaggaagttggttctcttctgtcaagaaagttttcaagtcatcttc |
298 |
Q |
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|||||| | ||||||||||| ||||| ||||||||||||||||| ||||| |
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| T |
41669864 |
aaaggaagcagttggttctcatctgtgaagaaagttttcaagtcttcttc |
41669913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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