View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8924_low_37 (Length: 327)

Name: NF8924_low_37
Description: NF8924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8924_low_37
NF8924_low_37
[»] chr3 (18 HSPs)
chr3 (1-310)||(679297-679606)
chr3 (121-310)||(751101-751290)
chr3 (1-123)||(747402-747524)
chr3 (1-116)||(7324687-7324802)
chr3 (1-116)||(2491756-2491871)
chr3 (9-119)||(9594898-9595008)
chr3 (1-114)||(2501831-2501944)
chr3 (3-116)||(9566094-9566207)
chr3 (3-107)||(7443269-7443373)
chr3 (9-116)||(9562235-9562342)
chr3 (123-283)||(2632504-2632659)
chr3 (1-116)||(2474779-2474895)
chr3 (1-108)||(754888-754995)
chr3 (1-104)||(2644633-2644736)
chr3 (1-104)||(2659420-2659523)
chr3 (1-96)||(7334560-7334655)
chr3 (1-123)||(2631016-2631138)
chr3 (1-116)||(2476311-2476426)


Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 679606 - 679297
Alignment:
Q  1 gctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679606 gctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaag 679507  T
Q  101 aatagagggcatcccacattatttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679506 aatagagggcatcccacattatttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgct 679407  T
Q  201 cttttgattatcatagtatcatatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttatatgc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  679406 cttttgattatcatagtatcatatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatgtagttatatgc 679307  T
Q  301 ctcattttca 310  Q
    ||||||||||    
T  679306 ctcattttca 679297  T

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Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 121 - 310
Target Start/End: Complemental strand, 751290 - 751101
Alignment:
Q  121 atttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatc 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  751290 atttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatc 751191  T
Q  221 atatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttatatgcctcattttca 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  751190 atatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttctatgcctcattttca 751101  T

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Target: chr3; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 747524 - 747402
Alignment:
Q  1 gctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaag 100  Q
    ||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||| |||    
T  747524 gctttggatatgatcatttcattgataattataaggtcgttgttgtttcttcagaaaaagaggttttttttaatactttgggggctgattattggaaaag 747425  T
Q  101 aatagagggcatcccacattatt 123  Q
    |||||||||||||||||||||||    
T  747424 aatagagggcatcccacattatt 747402  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 7324802 - 7324687
Alignment:
Q  1 gctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaag 100  Q
    ||||||| || |||||||| ||||||||  |||||||  |||||||||||||  ||||  | ||| |||||||||||||||||  |||||||||||||||    
T  7324802 gctttgggtacgatcatttaattgataactataaggtcattgttgtttcttccaaaaataaagttagtgttaatactttggggactgattattggacaag 7324703  T
Q  101 aatagagggcatccca 116  Q
    |||||||| |||||||    
T  7324702 aatagaggacatccca 7324687  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 2491756 - 2491871
Alignment:
Q  1 gctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaag 100  Q
    ||||||| |||||||||||||||||| |  |||||||  ||| ||||||||| ||||| || ||| ||||| |||||||||||  |||||||||||||||    
T  2491756 gctttgggtatgatcatttcattgatgattataaggtcattggtgtttcttccgaaaatgaagttagtgtttatactttggggactgattattggacaag 2491855  T
Q  101 aatagagggcatccca 116  Q
    |||  ||| |||||||    
T  2491856 aatcaaggacatccca 2491871  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 9595008 - 9594898
Alignment:
Q  9 tatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagg 108  Q
    ||||||||||||||||||||  |||||||  ||| | || ||||  |||| || |||| |||| |||||||||||  |||||||||||||||||||||||    
T  9595008 tatgatcatttcattgataagtataaggtcattgattttgcttccaaaaatgatgtttttgtttatactttggggactgattattggacaagaatagagg 9594909  T
Q  109 gcatcccacat 119  Q
     ||||||||||    
T  9594908 acatcccacat 9594898  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 2501831 - 2501944
Alignment:
Q  1 gctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaag 100  Q
    ||||||||||||||||||||||||||||  |||||||  |||||||||||   ||||| || ||| | |||||||||||||||  ||||||||||| ||     
T  2501831 gctttggatatgatcatttcattgataattataaggtcattgttgtttctgacgaaaatgaagttagggttaatactttggggactgattattggagaaa 2501930  T
Q  101 aatagagggcatcc 114  Q
     ||||||| |||||    
T  2501931 gatagaggacatcc 2501944  T

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Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 9566207 - 9566094
Alignment:
Q  3 tttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaa 102  Q
    ||||| ||||||||||||||||||||  ||||| |  ||  ||||||| || |||| || ||| ||||| |||||||||||  |||||||||||||||||    
T  9566207 tttgggtatgatcatttcattgataattataagctcatttctgtttctacaaaaaatgaagttagtgtttatactttggggactgattattggacaagaa 9566108  T
Q  103 tagagggcatccca 116  Q
    |||||| |||||||    
T  9566107 tagaggacatccca 9566094  T

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Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 7443373 - 7443269
Alignment:
Q  3 tttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaa 102  Q
    ||||| ||||||||||||||||||||  |||| ||||||| | |||||||  || | ||||||| ||||||| ||||||||  ||||||||||| |||||    
T  7443373 tttgggtatgatcatttcattgataattataaagttgttgctatttcttccaaatatgaggtttttgttaatgctttggggactgattattggagaagaa 7443274  T
Q  103 tagag 107  Q
    |||||    
T  7443273 tagag 7443269  T

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Target: chr3; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 9 - 116
Target Start/End: Complemental strand, 9562342 - 9562235
Alignment:
Q  9 tatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagg 108  Q
    ||||||||||||||||||||  |||||||  ||||||||||| |  |||| || ||| ||||| |||||||||||  |||||||||||  ||||||||||    
T  9562342 tatgatcatttcattgataattataaggtcattgttgtttctaccaaaaatgaagttagtgtttatactttggggactgattattggaagagaatagagg 9562243  T
Q  109 gcatccca 116  Q
     |||||||    
T  9562242 acatccca 9562235  T

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Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 123 - 283
Target Start/End: Original strand, 2632504 - 2632659
Alignment:
Q  123 ttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcag----attctttcaacacttgctcttttgattatcatagta 218  Q
    |||||||||||||||||||||||| |||||||||| ||     |||||||||||||||||     |||||||| |||| | |||||  ||||||||||      
T  2632504 ttcaattctccaaaccctgcagttttaaaatcagcaca----ttgttttgtgaagatcaggtcttttctttcaccactcgttctttgtattatcatag-- 2632597  T
Q  219 tcatatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagttt 283  Q
    ||||| ||||||||||||| | || |||||   | |||||||||| | |||||||||||||||||    
T  2632598 tcatacacttcacatgtgtgtgaataattc---atatttagctttttgaaacttatagtgagttt 2632659  T

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Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 2474779 - 2474895
Alignment:
Q  1 gctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttggggga-tgattattggacaa 99  Q
    ||||||||||||||||||||||||||||  | ||||   ||||  |||||||  |||| || ||| |||||||||||||   ||| ||||||||||||||    
T  2474779 gctttggatatgatcatttcattgataattacaaggccattgtattttcttccaaaaatgaagttagtgttaatacttttaaggactgattattggacaa 2474878  T
Q  100 gaatagagggcatccca 116  Q
    ||||||||| |||||||    
T  2474879 gaatagaggacatccca 2474895  T

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Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 754995 - 754888
Alignment:
Q  1 gctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaag 100  Q
    ||||||| ||||||||||||||| ||||  | |||||  ||  ||||||| || |||| || ||||||||| |||| ||||||  |||||||||||||||    
T  754995 gctttgggtatgatcatttcattcataattacaaggtcatttctgtttctacaaaaaatgaagtttgtgtttatacattggggactgattattggacaag 754896  T
Q  101 aatagagg 108  Q
    ||||||||    
T  754895 aatagagg 754888  T

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Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 2644736 - 2644633
Alignment:
Q  1 gctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaag 100  Q
    |||||||||||||||| ||| |||||||  |||||||  || ||||||||   ||||| || ||| | |||||||||||||||  |||||||||||||||    
T  2644736 gctttggatatgatcacttcgttgataattataaggtcattattgtttctgacgaaaatgaagttagggttaatactttggggactgattattggacaag 2644637  T
Q  101 aata 104  Q
    ||||    
T  2644636 aata 2644633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 2659523 - 2659420
Alignment:
Q  1 gctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaag 100  Q
    ||||||||||||||||||| ||||||||  ||||||||||||    |||||   |||||| | || |||||||||||||||||  ||||||||||| |||    
T  2659523 gctttggatatgatcattttattgataattataaggttgttgcccattctttcaaaaaagtgattagtgttaatactttggggactgattattggagaag 2659424  T
Q  101 aata 104  Q
    ||||    
T  2659423 aata 2659420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 7334655 - 7334560
Alignment:
Q  1 gctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattgga 96  Q
    |||| |||||||||||||||||||||||  ||||||| |||| |||||||  | ||||| | ||| ||||| ||||||||||   |||||||||||    
T  7334655 gcttcggatatgatcatttcattgataattataaggtcgttgctgtttctgtaaaaaaaaaagttagtgtttatactttgggaactgattattgga 7334560  T

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Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 2631016 - 2631138
Alignment:
Q  1 gctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaag 100  Q
    ||||||| ||||||  ||||||||||||  |||||||  ||| |||||||||  |||| || |||| | || ||||||| |||  ||||||||||| |||    
T  2631016 gctttgggtatgattgtttcattgataagtataaggtcattgctgtttcttccaaaaatgaagtttttctttatactttagggactgattattggaaaag 2631115  T
Q  101 aatagagggcatcccacattatt 123  Q
    |||||| | ||||||| ||||||    
T  2631116 aatagacgacatcccatattatt 2631138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 2476311 - 2476426
Alignment:
Q  1 gctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaag 100  Q
    ||||||| ||||||||||  ||||||||  | |||||  || ||||||||    |||| || ||| |||||||||||||||||  |||||||||||||||    
T  2476311 gctttgggtatgatcattctattgataactacaaggtcattcttgtttctgacaaaaacgaagttagtgttaatactttggggactgattattggacaag 2476410  T
Q  101 aatagagggcatccca 116  Q
    |||  ||| |||||||    
T  2476411 aatgcaggacatccca 2476426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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