View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8924_low_4 (Length: 754)
Name: NF8924_low_4
Description: NF8924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8924_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 258 - 650
Target Start/End: Complemental strand, 8518452 - 8518060
Alignment:
| Q |
258 |
cccagatgggatttttgctctaagttccaaagaatgttcctttggagcataatgagcaacaaaaggtgaatctgaaagagattcaatagaaggggcaatg |
357 |
Q |
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| T |
8518452 |
cccagatgggatttttgctctaagttccaaagaatgttcctttggagcataatgagcaacaaaaggtgaatctgaaagagattcaatagaaggggcaatg |
8518353 |
T |
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| Q |
358 |
atataagcttccgtgggatgcaagttaccactactaggattaacccttaacgaccaagttgaaaaggaagtacttttccaagctgaaagtgcaagagaat |
457 |
Q |
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| T |
8518352 |
atataagcttccgtgggatgcaagttaccactactaggattaacccttaacgaccatgttgaaaaggaagtacttttccaagctgaaagtgcaagagaat |
8518253 |
T |
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| Q |
458 |
gatagaggaagtgagaaatagtggatttggaaatgggttttggagatggaagagaattgaagagagaagggtaaaatggtgattgttgttcttgttgagg |
557 |
Q |
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| T |
8518252 |
gatagaggaagtgagaaatagtggatttggaaatgggttttggagatggaagagaattgaagagagaagggtaaaagggtgattgttgttcttgttgagg |
8518153 |
T |
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| Q |
558 |
ggtaaaatggggaagaggaataagaggtgaattgagaaacctgcgaaatgggtttggttggtttgcccaatcaagaccatgtggtcctcttgc |
650 |
Q |
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| T |
8518152 |
ggtaaaatggggaagaggaataagaggtgaattgagaaacctgcgaaatgggtttggttggtttgcccaatcaagaccatgtggtcctcttgc |
8518060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 8518697 - 8518512
Alignment:
| Q |
13 |
ggtgtttcaaattcaggaaaaacatcaagtcccataagaaacttcaactcttcacaccctaatgaatccaaaagcttcacatcccaaccaagactagcag |
112 |
Q |
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| T |
8518697 |
ggtgtttcaaattcaggaaaaacatcaagtcccataagaaacttcaactcttcacaccctaatgaatccaaaagcttcacatcccaaccaagactagcag |
8518598 |
T |
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| Q |
113 |
cagccattgaaacagcaccaatagcatgaccaacatcatgattacaataccgaaaaccacgttcgccatacttccaactttcacgc |
198 |
Q |
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| T |
8518597 |
cagccattgaaatagcaccaatagcatgaccaacatcatgattacaataccgaaaaccacgttcaccatacttccaactttcacgc |
8518512 |
T |
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