View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8924_low_40 (Length: 320)
Name: NF8924_low_40
Description: NF8924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8924_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 294
Target Start/End: Complemental strand, 30114270 - 30113992
Alignment:
| Q |
17 |
tatttaagaaaagtccgacaagtattcttgaagttatcgagtgatgagagagacattggtgttttctttaagatctttgtcgttgataagnnnnnnnggc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
30114270 |
tatttaagaaaagtccgacaagtattcttgaagttatcgagtgatgagagggacattggtgttttctttaagatctttgacgttgataagtttttt-ggc |
30114172 |
T |
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| Q |
117 |
tcatatgtgagcgttccccatactattgttgtttgtcgtttctaaagttatcacaaatttctatttgatggcctcatatgaatcagttcaaagcacttc- |
215 |
Q |
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|||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30114171 |
tcatatgtgagcttcccccatactcttgttgtttgtcgtttctaaagttatcacaaatttctatttgatggcctcctatgaatcagttcaaagcacttct |
30114072 |
T |
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| Q |
216 |
-ttannnnnnnnaggggtacttcttaacttatattcggtcatttttataaacaaatgaataatttattatctcatttaaa |
294 |
Q |
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|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30114071 |
ttttatttttttaggggtgcttcttaacttatattcggtcatttttataaacaaatgaataatttattatctcatttaaa |
30113992 |
T |
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