View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8924_low_41 (Length: 314)

Name: NF8924_low_41
Description: NF8924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8924_low_41
NF8924_low_41
[»] chr2 (7 HSPs)
chr2 (13-300)||(2321387-2321683)
chr2 (1-300)||(2294072-2294380)
chr2 (38-300)||(2310403-2310665)
chr2 (40-300)||(2303685-2303945)
chr2 (38-300)||(2327240-2327502)
chr2 (39-298)||(2351263-2351522)
chr2 (57-300)||(2330955-2331198)
[»] chr8 (4 HSPs)
chr8 (53-300)||(41127267-41127517)
chr8 (53-126)||(26507056-26507129)
chr8 (160-259)||(26494893-26494992)
chr8 (213-256)||(26506923-26506966)
[»] chr4 (1 HSPs)
chr4 (213-276)||(55017070-55017133)
[»] chr5 (1 HSPs)
chr5 (213-265)||(15176356-15176408)


Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 13 - 300
Target Start/End: Complemental strand, 2321683 - 2321387
Alignment:
Q  13 acaacattacatactccaaatcgttacacataac---------ctataccctaggagaaatatgaacttgcaatggatttttcatcaccatagtgaattc 103  Q
    ||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2321683 acaacattacatactccaaatcgttacacataacacacataatctataccctaggagaaatatgaacttgcaatggatttttcatcaccatagtgaattc 2321584  T
Q  104 atctttttccgacaaatcaacatggccgccctccggaagctgccaattgaaattccaaaccaagttagccacaaaatattccaaatggagcaaagctaaa 203  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2321583 atctttttccgacaaatcaacatggccaccctccggaagctgccaattgaaattccaaaccaagttagccacaaaatattccaaatggagcaaagctaaa 2321484  T
Q  204 ttaagtccgggacaaattctccttccagctccaaacggcatcatctttatctctttactccctgtaatatcaaaagtctcatccttcaaaaaccttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2321483 ttaagtccgggacaaattctccttccagctccaaacggcatcatctttatctctttactccctataatatcaaaagtctcatccttcaaaaaccttt 2321387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 2294380 - 2294072
Alignment:
Q  1 gtggttcacacaacaacattacatactccaaatcgttacacataac---------ctataccctaggagaaatatgaacttgcaatggatttttcatcac 91  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||         ||||| |||||||||||||||||||||||||||||||||||||||    
T  2294380 gtggttcacacaacaacattacatactccacatcgttacatataacacacataatctatatcctaggagaaatatgaacttgcaatggatttttcatcac 2294281  T
Q  92 catagtgaattcatctttttccgacaaatcaacatggccgccctccggaagctgccaattgaaattccaaaccaagttagccacaaaatattccaaatgg 191  Q
    ||| |||||||| | | |||||| |||||||||||| |||||||| |||| || ||||| ||||||||||||||||||||||||||||||||||||||||    
T  2294280 catggtgaattcttgtatttccgtcaaatcaacatgcccgccctctggaaccttccaatcgaaattccaaaccaagttagccacaaaatattccaaatgg 2294181  T
Q  192 agcaaagctaaattaagtccgggacaaattctccttccagctccaaacggcatcatctttatctctttactccctgtaatatcaaaagtctcatccttca 291  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  2294180 agcaaagctaaattaagtccgggacaaattcttcttccagctccaaacggcatcatctttatctctttacttcctgtaatgtcaaaagtctcatccttca 2294081  T
Q  292 aaaaccttt 300  Q
    |||||||||    
T  2294080 aaaaccttt 2294072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 38 - 300
Target Start/End: Complemental strand, 2310665 - 2310403
Alignment:
Q  38 acacataacctataccctaggagaaatatgaacttgcaatggatttttcatcaccatagtgaattcatctttttccgacaaatcaacatggccgccctcc 137  Q
    |||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| | | |||||| |||||||||||| ||||||||     
T  2310665 acacataatctatatcctaggagaaatatgaacttgcactggatttttcatcaccatagtgaattcttgtatttccgtcaaatcaacatgcccgccctct 2310566  T
Q  138 ggaagctgccaattgaaattccaaaccaagttagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattctccttccagctccaa 237  Q
    |||| || ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2310565 ggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattcttcttccagctccaa 2310466  T
Q  238 acggcatcatctttatctctttactccctgtaatatcaaaagtctcatccttcaaaaaccttt 300  Q
    ||||||||||||||||||||||||| |||| |||  |||||||||||||||||||||||||||    
T  2310465 acggcatcatctttatctctttacttcctggaatgacaaaagtctcatccttcaaaaaccttt 2310403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 40 - 300
Target Start/End: Complemental strand, 2303945 - 2303685
Alignment:
Q  40 acataacctataccctaggagaaatatgaacttgcaatggatttttcatcaccatagtgaattcatctttttccgacaaatcaacatggccgccctccgg 139  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||| ||||||||| ||    
T  2303945 acataatctatatcctaggagaaatatgaacttgcaatggatttttcatcaccatattgaattcttgtttttccgacaaatcaacatagccgccctctgg 2303846  T
Q  140 aagctgccaattgaaattccaaaccaagttagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattctccttccagctccaaac 239  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||| ||||| |||||    
T  2303845 aagcttccaatcgaaattccaaaccaaattagccacaaaatattctaaatggagcaaagctaaattaagtgcaggacaaattctcctttcagcttcaaac 2303746  T
Q  240 ggcatcatctttatctctttactccctgtaatatcaaaagtctcatccttcaaaaaccttt 300  Q
    ||||||||||||||||| |||||||||||||| |||||| ||||||||||| |||||||||    
T  2303745 ggcatcatctttatctccttactccctgtaatgtcaaaattctcatccttccaaaaccttt 2303685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 38 - 300
Target Start/End: Complemental strand, 2327502 - 2327240
Alignment:
Q  38 acacataacctataccctaggagaaatatgaacttgcaatggatttttcatcaccatagtgaattcatctttttccgacaaatcaacatggccgccctcc 137  Q
    |||||||| |||||  ||| ||||||||||||||||||||||||||||||||||||  |||||||||  |||||| |||||||| |||||||| ||||||    
T  2327502 acacataatctatattctatgagaaatatgaacttgcaatggatttttcatcaccacggtgaattcaaatttttctgacaaatcgacatggccaccctcc 2327403  T
Q  138 ggaagctgccaattgaaattccaaaccaagttagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattctccttccagctccaa 237  Q
    |||| || ||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||  ||| |||||||||||||| ||||||||||    
T  2327402 ggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaaattctcctaccagctccaa 2327303  T
Q  238 acggcatcatctttatctctttactccctgtaatatcaaaagtctcatccttcaaaaaccttt 300  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2327302 acggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaaccttt 2327240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 39 - 298
Target Start/End: Complemental strand, 2351522 - 2351263
Alignment:
Q  39 cacataacctataccctaggagaaatatgaacttgcaatggatttttcatcaccatagtgaattcatctttttccgacaaatcaacatggccgccctccg 138  Q
    ||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||| || || || |    
T  2351522 cacataaactatatcctaggagaaatacgaacttgcaatggatttttcatcaccacagtgaattcttgtttttccgacaaatcaacatgcccaccttctg 2351423  T
Q  139 gaagctgccaattgaaattccaaaccaagttagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattctccttccagctccaaa 238  Q
    ||| || ||||| ||||||||||||||| |||||||||||||||||||| || |||||||||||||||  ||||||||| |||||||| ||| | |||||    
T  2351422 gaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaagtgaagcaaagctaaattatatccgggacagattctcctaccaacaccaaa 2351323  T
Q  239 cggcatcatctttatctctttactccctgtaatatcaaaagtctcatccttcaaaaacct 298  Q
     |||||||||||||||||||||||||| ||||| ||||| || |||||||||||||||||    
T  2351322 tggcatcatctttatctctttactccccgtaatgtcaaatgtttcatccttcaaaaacct 2351263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 57 - 300
Target Start/End: Complemental strand, 2331198 - 2330955
Alignment:
Q  57 ggagaaatatgaacttgcaatggatttttcatcaccatagtgaattcatctttttccgacaaatcaacatggccgccctccggaagctgccaattgaaat 156  Q
    |||||||||||| | ||||||||||||||||| |||||||||||||| | ||| || |||||||||||  | || ||||| |||| || ||||| |||||    
T  2331198 ggagaaatatgagcctgcaatggatttttcatgaccatagtgaattcctgtttctctgacaaatcaacgcgaccaccctcgggaaccttccaatcgaaat 2331099  T
Q  157 tccaaaccaagttagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattctccttccagctccaaacggcatcatctttatctc 256  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||||| ||||||||||| |||||||||||||||||    
T  2331098 tccaaaccaaattagccacaaaatattccaaatgaagcaaagctaaattatatccaggacaaattctcctcccagctccaaatggcatcatctttatctc 2330999  T
Q  257 tttactccctgtaatatcaaaagtctcatccttcaaaaaccttt 300  Q
    |||||| |||||||| ||||||||||||||||||||||||||||    
T  2330998 tttacttcctgtaatgtcaaaagtctcatccttcaaaaaccttt 2330955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 53 - 300
Target Start/End: Complemental strand, 41127517 - 41127267
Alignment:
Q  53 cctaggagaaatatgaacttgcaatggatttttcatcaccatagtgaattcatctttttccgacaaatcaacatggccg---ccctccggaagctgccaa 149  Q
    ||||||||||||||||||||||| |||||||||||| ||||  |||||||||  ||||||||||||||||||||  ||    |||||  ||| || ||||    
T  41127517 cctaggagaaatatgaacttgcagtggatttttcataaccacggtgaattcagttttttccgacaaatcaacataaccagctccctctagaatcttccaa 41127418  T
Q  150 ttgaaattccaaaccaagttagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattctccttccagctccaaacggcatcatct 249  Q
    || |||||||| ||||| ||||||||||| |||||||||||||||||||||||||||  ||| |||||||||||||| ||| ||||||||||||||||||    
T  41127417 ttaaaattccagaccaaattagccacaaagtattccaaatggagcaaagctaaattatatccaggacaaattctcctcccaactccaaacggcatcatct 41127318  T
Q  250 ttatctctttactccctgtaatatcaaaagtctcatccttcaaaaaccttt 300  Q
    ||||||||||| |||| ||||||||||||| ||||||||||||||||||||    
T  41127317 ttatctctttagtcccggtaatatcaaaagcctcatccttcaaaaaccttt 41127267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 26507129 - 26507056
Alignment:
Q  53 cctaggagaaatatgaacttgcaatggatttttcatcaccatagtgaattcatctttttccgacaaatcaacat 126  Q
    ||||||||| || ||| ||| |||||||| ||||||||||||||| ||||| | |||||| |||||||||||||    
T  26507129 cctaggagatatttgagcttccaatggatatttcatcaccatagtaaattcctgtttttctgacaaatcaacat 26507056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 259
Target Start/End: Complemental strand, 26494992 - 26494893
Alignment:
Q  160 aaaccaagttagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattctccttccagctccaaacggcatcatctttatctcttt 259  Q
    ||||||| ||||| ||||| ||||| ||||||||||  || || |||    | |||||||| ||||| || |||||||||||||||||||||||||||||    
T  26494992 aaaccaaattagcaacaaagtattctaaatggagcattgccaatttataggcaggacaaatcctcctccctgctccaaacggcatcatctttatctcttt 26494893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 256
Target Start/End: Complemental strand, 26506966 - 26506923
Alignment:
Q  213 ggacaaattctccttccagctccaaacggcatcatctttatctc 256  Q
    |||||||| |||||||| |||||||| |||||||||||||||||    
T  26506966 ggacaaatcctccttcctgctccaaatggcatcatctttatctc 26506923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 276
Target Start/End: Complemental strand, 55017133 - 55017070
Alignment:
Q  213 ggacaaattctccttccagctccaaacggcatcatctttatctctttactccctgtaatatcaa 276  Q
    |||||||| ||||| ||||| ||||||||||||||||| ||||||||| | |||||||||||||    
T  55017133 ggacaaatcctcctcccagcaccaaacggcatcatcttcatctctttagttcctgtaatatcaa 55017070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 213 - 265
Target Start/End: Original strand, 15176356 - 15176408
Alignment:
Q  213 ggacaaattctccttccagctccaaacggcatcatctttatctctttactccc 265  Q
    ||||| |||||||| || |||||||| ||||||||||||||||||||||||||    
T  15176356 ggacacattctcctccctgctccaaatggcatcatctttatctctttactccc 15176408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University