View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8924_low_48 (Length: 295)

Name: NF8924_low_48
Description: NF8924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8924_low_48
NF8924_low_48
[»] chr6 (12 HSPs)
chr6 (129-281)||(21065291-21065443)
chr6 (129-281)||(21042194-21042346)
chr6 (129-281)||(21087077-21087229)
chr6 (10-60)||(21042415-21042465)
chr6 (10-60)||(21087298-21087348)
chr6 (10-60)||(21042109-21042159)
chr6 (10-60)||(21065206-21065256)
chr6 (10-60)||(21086992-21087042)
chr6 (10-60)||(21065514-21065564)
chr6 (199-239)||(21042533-21042573)
chr6 (199-239)||(21065632-21065672)
chr6 (199-239)||(21087416-21087456)


Alignment Details
Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 129 - 281
Target Start/End: Complemental strand, 21065443 - 21065291
Alignment:
Q  129 aactgttgaatgtgtgtctctagatttatgtcaaatatttaaatatcttgttctctgaagtctgaaaattatctacctgctccatctggttcgacctaaa 228  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  21065443 aactgttgaatgtgtgtctctagatttatgtcaaatatttaggtatcttgttctctgaagtctgaaaattatctacctgctccatctggttggacctaaa 21065344  T
Q  229 aggttctgattttctctgactaaatgactattcaatttcaaggcaatttgaat 281  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  21065343 aggttctgattttctctgactaaatgactattcaatttcaagtcaatttgaat 21065291  T

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Target: chr6; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 129 - 281
Target Start/End: Complemental strand, 21042346 - 21042194
Alignment:
Q  129 aactgttgaatgtgtgtctctagatttatgtcaaatatttaaatatcttgttctctgaagtctgaaaattatctacctgctccatctggttcgacctaaa 228  Q
    |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  21042346 aactgttgaatgtgtgtctctagatttatgtcaaatatttaggcatcttgttctctgaagtctgaaaattatctacctgctccatctggttggacctaaa 21042247  T
Q  229 aggttctgattttctctgactaaatgactattcaatttcaaggcaatttgaat 281  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  21042246 aggttctgattttctctgactaaatgactattcaattttagggcaatttgaat 21042194  T

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Target: chr6; HSP #3
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 129 - 281
Target Start/End: Complemental strand, 21087229 - 21087077
Alignment:
Q  129 aactgttgaatgtgtgtctctagatttatgtcaaatatttaaatatcttgttctctgaagtctgaaaattatctacctgctccatctggttcgacctaaa 228  Q
    |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  21087229 aactgttgaatgtgtgtctctagatttatgtcaaatatttaggcatcttgttctctgaagtctgaaaattatctacctgctccatctggttggacctaaa 21087130  T
Q  229 aggttctgattttctctgactaaatgactattcaatttcaaggcaatttgaat 281  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  21087129 aggttctgattttctctgactaaatgactattcaattttagggcaatttgaat 21087077  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 21042465 - 21042415
Alignment:
Q  10 tttcgtgttgattttgtttaatttcacgatctttgtttgtaagatgctgtg 60  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  21042465 tttcgtgttgattttgtttaatttcatgatctgtgtttgtaagatgctgtg 21042415  T

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Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 21087348 - 21087298
Alignment:
Q  10 tttcgtgttgattttgtttaatttcacgatctttgtttgtaagatgctgtg 60  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  21087348 tttcgtgttgattttgtttaatttcatgatctgtgtttgtaagatgctgtg 21087298  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 21042159 - 21042109
Alignment:
Q  10 tttcgtgttgattttgtttaatttcacgatctttgtttgtaagatgctgtg 60  Q
    |||| ||||||||||||||||||||||||| | ||||||||||||||||||    
T  21042159 tttcttgttgattttgtttaatttcacgatttgtgtttgtaagatgctgtg 21042109  T

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Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 21065256 - 21065206
Alignment:
Q  10 tttcgtgttgattttgtttaatttcacgatctttgtttgtaagatgctgtg 60  Q
    |||| ||||||||||||||||||||||||| | ||||||||||||||||||    
T  21065256 tttcatgttgattttgtttaatttcacgatttgtgtttgtaagatgctgtg 21065206  T

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Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 21087042 - 21086992
Alignment:
Q  10 tttcgtgttgattttgtttaatttcacgatctttgtttgtaagatgctgtg 60  Q
    |||| ||||||||||||||||||||||||| | ||||||||||||||||||    
T  21087042 tttcttgttgattttgtttaatttcacgatttgtgtttgtaagatgctgtg 21086992  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 21065564 - 21065514
Alignment:
Q  10 tttcgtgttgattttgtttaatttcacgatctttgtttgtaagatgctgtg 60  Q
    ||||||||||||||  |||||||||||||||  ||||||||||||||||||    
T  21065564 tttcgtgttgatttgatttaatttcacgatcagtgtttgtaagatgctgtg 21065514  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 21042573 - 21042533
Alignment:
Q  199 atctacctgctccatctggttcgacctaaaaggttctgatt 239  Q
    |||||||||| |||||||||| |||| ||||||||||||||    
T  21042573 atctacctgcaccatctggttggaccaaaaaggttctgatt 21042533  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 21065672 - 21065632
Alignment:
Q  199 atctacctgctccatctggttcgacctaaaaggttctgatt 239  Q
    |||||||||| |||||||||| |||| ||||||||||||||    
T  21065672 atctacctgcaccatctggttggaccaaaaaggttctgatt 21065632  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 21087456 - 21087416
Alignment:
Q  199 atctacctgctccatctggttcgacctaaaaggttctgatt 239  Q
    |||||||||| |||||||||| |||| ||||||||||||||    
T  21087456 atctacctgcaccatctggttggaccaaaaaggttctgatt 21087416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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