View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8924_low_58 (Length: 240)
Name: NF8924_low_58
Description: NF8924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8924_low_58 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 53754355 - 53754570
Alignment:
| Q |
19 |
ctccagctggttcagggaaagggactggaattctaggtctactgagtatcctaatgcctccaaaaccaccagctgctttttgaaatgctagagatggaaa |
118 |
Q |
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| T |
53754355 |
ctccagctggttcagggaaagggactggaattctaggtctactgagtatcctaatgcctccaaaaccaccagctgctttttgaaatgctagagatggaaa |
53754454 |
T |
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| Q |
119 |
gtagtaaaagcttccaatttgatccttcacttgaagaatatatgtgaagttcctccctggtgggatggggcatgttgttcccgaaacaccatcttcgaat |
218 |
Q |
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| T |
53754455 |
gtagtaaaagcttccaatttgatccttcacttgaagaatatatgtgaagttcctccctggtgggatggggcatgttgttcccgaaacaccatcttcgaat |
53754554 |
T |
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| Q |
219 |
gagttccttctctgct |
234 |
Q |
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| T |
53754555 |
gagttccttctctgct |
53754570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 45 - 234
Target Start/End: Original strand, 8571769 - 8571958
Alignment:
| Q |
45 |
ggaattctaggtctactgagtatcctaatgcctccaaaaccaccagctgctttttgaaatgctagagatggaaagtagtaaaagcttccaatttgatcct |
144 |
Q |
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| T |
8571769 |
ggaattcttggcctacttagaattctaattcctccaaaaccaccagcagctttgtggaatgcaagagatgggaaataatagaaactaccaatttgatctt |
8571868 |
T |
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| Q |
145 |
tcacttgaagaatatatgtgaagttcctccctggtgggatggggcatgttgttcccgaaacaccatcttcgaatgagttccttctctgct |
234 |
Q |
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| T |
8571869 |
ttacttgaagtatgtatgtgaagttctttccaggtggaatgggacatgttgttccaaacactccatcttcgtatgagttccttctctgct |
8571958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 213
Target Start/End: Original strand, 28940731 - 28940921
Alignment:
| Q |
23 |
agctggttcagggaaagggactggaattctaggtctactgagtatcctaatgcctccaaaaccaccagctgctttttgaaatgctagagatggaaagtag |
122 |
Q |
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| T |
28940731 |
agctggttcagggaaaggaacaggaatccttggtctgctaaggattttgatggatccaaaaccaccagctgccttgtgaaaagcaagagatggaaaatag |
28940830 |
T |
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| Q |
123 |
taaaagcttccaatttgatccttcacttgaagaatatatgtgaagttcctccctggtgggatggggcatgttgttcccgaaacaccatctt |
213 |
Q |
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| T |
28940831 |
aagaagcttccaatttgatctttgacttgaagtgtgtatgtgaagttcttcccaggagggatgggacatgttgtaccataaactccatctt |
28940921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 170
Target Start/End: Complemental strand, 17346429 - 17346341
Alignment:
| Q |
82 |
aaccaccagctgctttttgaaatgctagagatggaaagtagtaaaagcttccaatttgatccttcacttgaagaatatatgtgaagttc |
170 |
Q |
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| T |
17346429 |
aaccacctgctgccttgtgaaatgcaagggaaggaaagtagaaatagctaccaatctgatcttttacttgaagaatataagtgaagttc |
17346341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 153
Target Start/End: Complemental strand, 42015364 - 42015289
Alignment:
| Q |
78 |
ccaaaaccaccagctgctttttgaaatgctagagatggaaagtagtaaaagcttccaatttgatccttcacttgaa |
153 |
Q |
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| T |
42015364 |
ccaaatccaccagctgctctttgaaaattaagtgaaggaaagtagaaaaaacttccaatctgatccttcacttgaa |
42015289 |
T |
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