View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8924_low_60 (Length: 238)
Name: NF8924_low_60
Description: NF8924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8924_low_60 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 40 - 222
Target Start/End: Original strand, 27762084 - 27762264
Alignment:
| Q |
40 |
ctattatattttataattgagaataataaattgcaataaagaccttaataaattgcaataa-tacctttatccatccatctgtacatctttgaataaagt |
138 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27762084 |
ctattacattttataattgagaataataaattgcaataaagaccttaataaattgcaataaatacctttt---atccatctgtacatctttgaataaagt |
27762180 |
T |
|
| Q |
139 |
ggctccacacttctttaccttattgagcttggaaggactcacttttcacttaaattaagacattaaactctcatctcttcaaac |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27762181 |
ggctccacacttctttaccttattgagcttggaaggactcacttttgacttaaattaagacattacactctcatctcttcaaac |
27762264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University