View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8924_low_66 (Length: 208)

Name: NF8924_low_66
Description: NF8924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8924_low_66
NF8924_low_66
[»] scaffold0012 (1 HSPs)
scaffold0012 (15-58)||(202332-202375)
[»] chr7 (3 HSPs)
chr7 (15-58)||(43364179-43364222)
chr7 (15-58)||(5222284-5222327)
chr7 (17-58)||(29865181-29865223)
[»] chr1 (5 HSPs)
chr1 (15-58)||(9315892-9315935)
chr1 (15-58)||(19329305-19329348)
chr1 (15-58)||(21814749-21814792)
chr1 (17-58)||(47293952-47293993)
chr1 (18-58)||(45620397-45620437)
[»] chr3 (7 HSPs)
chr3 (14-58)||(20628599-20628643)
chr3 (17-58)||(4501049-4501090)
chr3 (17-58)||(4644574-4644615)
chr3 (17-58)||(27900458-27900499)
chr3 (15-58)||(4506375-4506418)
chr3 (19-58)||(9331391-9331430)
chr3 (15-59)||(25805754-25805798)
[»] chr8 (4 HSPs)
chr8 (15-54)||(44246155-44246194)
chr8 (19-57)||(2268603-2268641)
chr8 (17-58)||(9907157-9907198)
chr8 (15-58)||(5064246-5064289)
[»] chr5 (5 HSPs)
chr5 (15-58)||(42729061-42729104)
chr5 (15-52)||(9335396-9335433)
chr5 (17-58)||(3413542-3413583)
chr5 (17-58)||(4694463-4694504)
chr5 (17-58)||(12919202-12919243)
[»] chr4 (4 HSPs)
chr4 (15-58)||(40976843-40976886)
chr4 (19-58)||(667924-667963)
chr4 (17-58)||(8847786-8847828)
chr4 (15-48)||(23543791-23543824)
[»] chr6 (3 HSPs)
chr6 (17-58)||(13105135-13105176)
chr6 (19-58)||(18765619-18765658)
chr6 (19-58)||(1051151-1051191)
[»] chr2 (1 HSPs)
chr2 (17-58)||(22599899-22599940)
[»] scaffold0265 (1 HSPs)
scaffold0265 (15-58)||(18017-18060)


Alignment Details
Target: scaffold0012 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 202375 - 202332
Alignment:
Q  15 cctgtggagacgataacataaatacttacttttgatactacatc 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  202375 cctgtggagacgataacataaatacttacttttgatactacatc 202332  T

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Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 43364222 - 43364179
Alignment:
Q  15 cctgtggagacgataacataaatacttacttttgatactacatc 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  43364222 cctgtggagacgataacataaatacttacttttgatactacatc 43364179  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 5222327 - 5222284
Alignment:
Q  15 cctgtggagacgataacataaatacttacttttgatactacatc 58  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  5222327 cctgtggagacgataacaaaaatacttacttttgatactacatc 5222284  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 29865181 - 29865223
Alignment:
Q  17 tgtggagacgata-acataaatacttacttttgatactacatc 58  Q
    ||||||||||||| ||| |||||||||||||||||||||||||    
T  29865181 tgtggagacgatacacaaaaatacttacttttgatactacatc 29865223  T

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Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 9315935 - 9315892
Alignment:
Q  15 cctgtggagacgataacataaatacttacttttgatactacatc 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  9315935 cctgtggagacgataacataaatacttacttttgatactacatc 9315892  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 19329348 - 19329305
Alignment:
Q  15 cctgtggagacgataacataaatacttacttttgatactacatc 58  Q
    ||||||||||||||| || |||||||||||||||||||||||||    
T  19329348 cctgtggagacgatagcaaaaatacttacttttgatactacatc 19329305  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 21814792 - 21814749
Alignment:
Q  15 cctgtggagacgataacataaatacttacttttgatactacatc 58  Q
    |||||||||||||||||  ||| |||||||||||||||||||||    
T  21814792 cctgtggagacgataactaaaaaacttacttttgatactacatc 21814749  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 47293993 - 47293952
Alignment:
Q  17 tgtggagacgataacataaatacttacttttgatactacatc 58  Q
    |||||||||||||||| ||||| |||||||| ||||||||||    
T  47293993 tgtggagacgataacaaaaatatttacttttaatactacatc 47293952  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 45620397 - 45620437
Alignment:
Q  18 gtggagacgataacataaatacttacttttgatactacatc 58  Q
    ||||||| ||||||| |||||||||||||| ||||||||||    
T  45620397 gtggagatgataacaaaaatacttacttttaatactacatc 45620437  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 20628599 - 20628643
Alignment:
Q  14 acctgtggagacgataacataaatacttacttttgatactacatc 58  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  20628599 acctgtggagacgataacaaaaatacttacttttgatactacatc 20628643  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 4501090 - 4501049
Alignment:
Q  17 tgtggagacgataacataaatacttacttttgatactacatc 58  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  4501090 tgtggagacgataacaaaaatacttacttttgatactacatc 4501049  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 4644574 - 4644615
Alignment:
Q  17 tgtggagacgataacataaatacttacttttgatactacatc 58  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  4644574 tgtggagacgataacaaaaatacttacttttgatactacatc 4644615  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 27900499 - 27900458
Alignment:
Q  17 tgtggagacgataacataaatacttacttttgatactacatc 58  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  27900499 tgtggaaacgataacataaatacttacttttgatactacatc 27900458  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 4506418 - 4506375
Alignment:
Q  15 cctgtggagacgataacataaatacttacttttgatactacatc 58  Q
    |||||||||| ||||||| |||||||||||||||||||||||||    
T  4506418 cctgtggagatgataacaaaaatacttacttttgatactacatc 4506375  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 9331391 - 9331430
Alignment:
Q  19 tggagacgataacataaatacttacttttgatactacatc 58  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  9331391 tggagacgatgacaaaaatacttacttttgatactacatc 9331430  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 25805754 - 25805798
Alignment:
Q  15 cctgtggagacgataacataaatacttacttttgatactacatcg 59  Q
    |||||| ||||||||||| ||||||||| ||||||||| ||||||    
T  25805754 cctgtgaagacgataacaaaaatacttatttttgatacaacatcg 25805798  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 44246155 - 44246194
Alignment:
Q  15 cctgtggagacgataacataaatacttacttttgatacta 54  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  44246155 cctgtggagacgataacataaatacttacttttgatacta 44246194  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 2268603 - 2268641
Alignment:
Q  19 tggagacgataacataaatacttacttttgatactacat 57  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  2268603 tggagacgataacaaaaatacttacttttgatactacat 2268641  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 9907157 - 9907198
Alignment:
Q  17 tgtggagacgataacataaatacttacttttgatactacatc 58  Q
    |||||||||||||||| ||||||||||||||||||| |||||    
T  9907157 tgtggagacgataacaaaaatacttacttttgatacaacatc 9907198  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 5064246 - 5064289
Alignment:
Q  15 cctgtggagacgataacataaatacttacttttgatactacatc 58  Q
    |||||| ||||||||||| |||||||||||||||||| ||||||    
T  5064246 cctgtgaagacgataacaaaaatacttacttttgatattacatc 5064289  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 42729104 - 42729061
Alignment:
Q  15 cctgtggagacgataacataaatacttacttttgatactacatc 58  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  42729104 cctgtggagacgataacaaaaatacttacttttgatactacatc 42729061  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 9335396 - 9335433
Alignment:
Q  15 cctgtggagacgataacataaatacttacttttgatac 52  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9335396 cctgtggagacgataacataaatacttacttttgatac 9335433  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 3413542 - 3413583
Alignment:
Q  17 tgtggagacgataacataaatacttacttttgatactacatc 58  Q
    |||||||||||| ||| |||||||||||||||||||||||||    
T  3413542 tgtggagacgatgacaaaaatacttacttttgatactacatc 3413583  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 4694463 - 4694504
Alignment:
Q  17 tgtggagacgataacataaatacttacttttgatactacatc 58  Q
    |||| ||||||||||| |||||||||||||||||||||||||    
T  4694463 tgtgaagacgataacaaaaatacttacttttgatactacatc 4694504  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 12919202 - 12919243
Alignment:
Q  17 tgtggagacgataacataaatacttacttttgatactacatc 58  Q
    |||||||||||||||  |||||||||||||||||||||||||    
T  12919202 tgtggagacgataacgaaaatacttacttttgatactacatc 12919243  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 40976843 - 40976886
Alignment:
Q  15 cctgtggagacgataacataaatacttacttttgatactacatc 58  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  40976843 cctgtggagaagataacataaatacttacttttgatactacatc 40976886  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 667924 - 667963
Alignment:
Q  19 tggagacgataacataaatacttacttttgatactacatc 58  Q
    ||||||| |||||| |||||||||||||||||||||||||    
T  667924 tggagacaataacaaaaatacttacttttgatactacatc 667963  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 8847828 - 8847786
Alignment:
Q  17 tgtggagacgata-acataaatacttacttttgatactacatc 58  Q
    ||||||||||||| ||| |||||||||||||||||||||||||    
T  8847828 tgtggagacgatacacaaaaatacttacttttgatactacatc 8847786  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 23543791 - 23543824
Alignment:
Q  15 cctgtggagacgataacataaatacttacttttg 48  Q
    |||||||||||||||||||||||| |||||||||    
T  23543791 cctgtggagacgataacataaatatttacttttg 23543824  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 13105176 - 13105135
Alignment:
Q  17 tgtggagacgataacataaatacttacttttgatactacatc 58  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  13105176 tgtggagacgataacaaaaatacttacttttgatactacatc 13105135  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 18765658 - 18765619
Alignment:
Q  19 tggagacgataacataaatacttacttttgatactacatc 58  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  18765658 tggagacgataacagaaatacttacttttgatactacatc 18765619  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 1051191 - 1051151
Alignment:
Q  19 tggagacgataacataaa-tacttacttttgatactacatc 58  Q
    |||||||||||||| ||| ||||||||||||||||||||||    
T  1051191 tggagacgataacaaaaaatacttacttttgatactacatc 1051151  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 22599940 - 22599899
Alignment:
Q  17 tgtggagacgataacataaatacttacttttgatactacatc 58  Q
    |||||||||||||||| |||||||||||||||||| ||||||    
T  22599940 tgtggagacgataacaaaaatacttacttttgataatacatc 22599899  T

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Target: scaffold0265 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 18017 - 18060
Alignment:
Q  15 cctgtggagacgataacataaatacttacttttgatactacatc 58  Q
    |||||||||||||||||  ||| |||||||||||||||||||||    
T  18017 cctgtggagacgataactaaaaaacttacttttgatactacatc 18060  T

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