View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8924_low_7 (Length: 687)

Name: NF8924_low_7
Description: NF8924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8924_low_7
NF8924_low_7
[»] scaffold0041 (2 HSPs)
scaffold0041 (1-674)||(95685-96358)
scaffold0041 (1-674)||(87669-88350)
[»] chr7 (2 HSPs)
chr7 (1-674)||(40869924-40870597)
chr7 (1-674)||(40877933-40878614)
[»] chr2 (1 HSPs)
chr2 (540-629)||(40352688-40352777)
[»] chr1 (2 HSPs)
chr1 (534-613)||(28346744-28346823)
chr1 (558-628)||(42730140-42730210)
[»] chr4 (1 HSPs)
chr4 (575-629)||(21715642-21715696)


Alignment Details
Target: scaffold0041 (Bit Score: 634; Significance: 0; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 634; E-Value: 0
Query Start/End: Original strand, 1 - 674
Target Start/End: Complemental strand, 96358 - 95685
Alignment:
Q  1 ccacctaatctgaagtgccattccaattaaagaagttttcacaaaaaactcaggagtacccgaccgaggaaaataaaccacatcaaacggctgcatatta 100  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  96358 ccacctaatctgaagtgtgattccaattaaagaagttttcacaaaaaactcaggagtacccgaccgaggataataaaccacatcaaacggctgcatatta 96259  T
Q  101 gtaccgagtcttactgcttcaataacttctagaactttcaccttccccctacccatcattccatcacttattagtaatccattgcctttaccatttcttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  96258 gtaccgagtcttactgcttcaataacttctagaactttcaccttccccctacccatcattccatcacttattagtaatccattgcctttaccatttcttc 96159  T
Q  201 taagtttattatcttcctcttctgaaaacgatgtaaatcctccgtaaggtggcgcaggacaaattccaattccactaccatatttccaccctgacgactc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  96158 taagtttattatcttcctcttctgaaaacgatgtaaatcctccgtaaggtggcgcaggacaaattccaattccactaccatatttccaccctgacgactc 96059  T
Q  301 caacattatttcgccttttttccctccgaattccaacacgtagttcgccgttttcagatctcaaaaacacgactgaatccccagaagcaagtttcttgtc 400  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  96058 caacattatttcgccttttttccctccaaattccaacacgtagttcgccgttttcagatctcaaaaacacgactgaatccccagaagcaagtttcttgtc 95959  T
Q  401 actgagtaatggactccatccagttgtcaacaaatgcctcttcggcgtgcccctataaacatgcctgaaatgccacttttcaccatgaacatccttggga 500  Q
    |||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  95958 actgacaaatggactccatccagttgtcaataaatgcctcttcggcgtgcccctataaacatgcctgaaatgccacttttcaccatgaacatccttggga 95859  T
Q  501 tagatgccctgaaaaggagggttacctgaatagtccatacgaggaaaaatcatttctgcacaatatctaggacaagaaaagccaccaccattgtttgcat 600  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  95858 tatatgccctgaaaaggagggttacctgaatagtccatacgaggaaaaatcatttctgcacaatatctaggacaagaaaagccaccaccattgtttgcat 95759  T
Q  601 cagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttaggaaacgttgatgccagcaacacca 674  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  95758 cagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacacca 95685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 1 - 674
Target Start/End: Complemental strand, 88350 - 87669
Alignment:
Q  1 ccacctaatctgaagtgccattccaattaaagaagttttcacaaaaaactcaggagtacccgaccgaggaaaataaaccacatcaaacggctgcatatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  88350 ccacctaatctgaagtgccattccaattaaagaagttttcacaaaaaactcaggagtacccgaccgaggataataaaccacatcaaacggctgcatatta 88251  T
Q  101 gtaccgagtcttactgcttcaataacttctagaactttcaccttccccctacccatcattccatcacttattagtaatccattgcctttaccatttcttc 200  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||    
T  88250 gtaccgagtcttactgcttcaataacttctagagctttcaccttccccctacccatcattccatcacttattagcaatccattacctttaccgtttcttc 88151  T
Q  201 taagtttattatcttcctcttctgaaaacgatgtaaatcctccgtaaggtggcgcaggacaaattccaattccactaccatatttccaccctgac----- 295  Q
     ||||||||||||||||||| | |||||||||| |||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||         
T  88150 gaagtttattatcttcctctcccgaaaacgatggaaatcctccgtaaggtggtgcagcacaaattccaattccactaccagatttccaccctgacaaagg 88051  T
Q  296 ---gactccaacattatttcgccttttttccctccgaattccaacacgtagttcgccgttttcagatctcaaaaacacgactgaatccccagaagcaagt 392  Q
       ||||||||||||||||||||||||  ||||||||||||||||| | || |||||||||||||||||||||||||| |  ||||||||||| ||||||    
T  88050 atcgactccaacattatttcgccttttagccctccgaattccaacatgaagatcgccgttttcagatctcaaaaacacaatcgaatccccagacgcaagt 87951  T
Q  393 ttcttgtcactgagtaatggactccatccagttgtcaacaaatgcctcttcggcgtgcccctataaacatgcctgaaatgccacttttcaccatgaacat 492  Q
    |||||||| ||||  || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  87950 ttcttgtcgctgacaaaaggactccatccagttgtcaacaaatgcctcttcggcgtgcccctataaacgtgcctgaaatgccacttttcgccatgaacat 87851  T
Q  493 ccttgggatagatgccctgaaaaggagggttacctgaatagtccatacgaggaaaaatcatttctgcacaatatctaggacaagaaaagccaccaccatt 592  Q
    |||||||| | ||  |||||| |||||||||| |||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  87850 ccttgggaaaaatatcctgaagaggagggttagctgaatagtccaaacgaggaaaaagcgtttctgcacaatatctaggacaagaaaagccaccaccatt 87751  T
Q  593 gtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttaggaaacgttgatgccagcaacacca 674  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  87750 gtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacacca 87669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 634; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 634; E-Value: 0
Query Start/End: Original strand, 1 - 674
Target Start/End: Original strand, 40869924 - 40870597
Alignment:
Q  1 ccacctaatctgaagtgccattccaattaaagaagttttcacaaaaaactcaggagtacccgaccgaggaaaataaaccacatcaaacggctgcatatta 100  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40869924 ccacctaatctgaagtgtgattccaattaaagaagttttcacaaaaaactcaggagtacccgaccgaggataataaaccacatcaaacggctgcatatta 40870023  T
Q  101 gtaccgagtcttactgcttcaataacttctagaactttcaccttccccctacccatcattccatcacttattagtaatccattgcctttaccatttcttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40870024 gtaccgagtcttactgcttcaataacttctagaactttcaccttccccctacccatcattccatcacttattagtaatccattgcctttaccatttcttc 40870123  T
Q  201 taagtttattatcttcctcttctgaaaacgatgtaaatcctccgtaaggtggcgcaggacaaattccaattccactaccatatttccaccctgacgactc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40870124 taagtttattatcttcctcttctgaaaacgatgtaaatcctccgtaaggtggcgcaggacaaattccaattccactaccatatttccaccctgacgactc 40870223  T
Q  301 caacattatttcgccttttttccctccgaattccaacacgtagttcgccgttttcagatctcaaaaacacgactgaatccccagaagcaagtttcttgtc 400  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40870224 caacattatttcgccttttttccctccaaattccaacacgtagttcgccgttttcagatctcaaaaacacgactgaatccccagaagcaagtttcttgtc 40870323  T
Q  401 actgagtaatggactccatccagttgtcaacaaatgcctcttcggcgtgcccctataaacatgcctgaaatgccacttttcaccatgaacatccttggga 500  Q
    |||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40870324 actgacaaatggactccatccagttgtcaataaatgcctcttcggcgtgcccctataaacatgcctgaaatgccacttttcaccatgaacatccttggga 40870423  T
Q  501 tagatgccctgaaaaggagggttacctgaatagtccatacgaggaaaaatcatttctgcacaatatctaggacaagaaaagccaccaccattgtttgcat 600  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40870424 tatatgccctgaaaaggagggttacctgaatagtccatacgaggaaaaatcatttctgcacaatatctaggacaagaaaagccaccaccattgtttgcat 40870523  T
Q  601 cagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttaggaaacgttgatgccagcaacacca 674  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  40870524 cagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacacca 40870597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 1 - 674
Target Start/End: Original strand, 40877933 - 40878614
Alignment:
Q  1 ccacctaatctgaagtgccattccaattaaagaagttttcacaaaaaactcaggagtacccgaccgaggaaaataaaccacatcaaacggctgcatatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40877933 ccacctaatctgaagtgccattccaattaaagaagttttcacaaaaaactcaggagtacccgaccgaggataataaaccacatcaaacggctgcatatta 40878032  T
Q  101 gtaccgagtcttactgcttcaataacttctagaactttcaccttccccctacccatcattccatcacttattagtaatccattgcctttaccatttcttc 200  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||    
T  40878033 gtaccgagtcttactgcttcaataacttctagagctttcaccttccccctacccatcattccatcacttattagcaatccattacctttaccgtttcttc 40878132  T
Q  201 taagtttattatcttcctcttctgaaaacgatgtaaatcctccgtaaggtggcgcaggacaaattccaattccactaccatatttccaccctgac----- 295  Q
     ||||||||||||||||||| | |||||||||| |||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||         
T  40878133 gaagtttattatcttcctctcccgaaaacgatggaaatcctccgtaaggtggtgcagcacaaattccaattccactaccagatttccaccctgacaaagg 40878232  T
Q  296 ---gactccaacattatttcgccttttttccctccgaattccaacacgtagttcgccgttttcagatctcaaaaacacgactgaatccccagaagcaagt 392  Q
       ||||||||||||||||||||||||  ||||||||||||||||| | || |||||||||||||||||||||||||| |  ||||||||||| ||||||    
T  40878233 atcgactccaacattatttcgccttttagccctccgaattccaacatgaagatcgccgttttcagatctcaaaaacacaatcgaatccccagacgcaagt 40878332  T
Q  393 ttcttgtcactgagtaatggactccatccagttgtcaacaaatgcctcttcggcgtgcccctataaacatgcctgaaatgccacttttcaccatgaacat 492  Q
    |||||||| ||||  || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  40878333 ttcttgtcgctgacaaaaggactccatccagttgtcaacaaatgcctcttcggcgtgcccctataaacgtgcctgaaatgccacttttcgccatgaacat 40878432  T
Q  493 ccttgggatagatgccctgaaaaggagggttacctgaatagtccatacgaggaaaaatcatttctgcacaatatctaggacaagaaaagccaccaccatt 592  Q
    |||||||| | ||  |||||| |||||||||| |||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  40878433 ccttgggaaaaatatcctgaagaggagggttagctgaatagtccaaacgaggaaaaagcgtttctgcacaatatctaggacaagaaaagccaccaccatt 40878532  T
Q  593 gtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttaggaaacgttgatgccagcaacacca 674  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  40878533 gtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacacca 40878614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 540 - 629
Target Start/End: Original strand, 40352688 - 40352777
Alignment:
Q  540 cgaggaaaaatcatttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagat 629  Q
    |||||||||||| |||| ||||| |||||||||  ||| || || |||||||||||||||||||| |||||||| || || |||||||||    
T  40352688 cgaggaaaaatcgtttcagcacagtatctaggaacagagaaccctccaccattgtttgcatcagactgtgtcaaagtctttgcaaaagat 40352777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 534 - 613
Target Start/End: Complemental strand, 28346823 - 28346744
Alignment:
Q  534 tccatacgaggaaaaatcatttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaa 613  Q
    |||| |||||| |||||| | || |||||||| ||||||  |||||| || ||||||||||| ||||||||||| |||||    
T  28346823 tccaaacgagggaaaatcgtctcggcacaatacctaggaacagaaaaacctccaccattgttagcatcagattgagtcaa 28346744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 558 - 628
Target Start/End: Complemental strand, 42730210 - 42730140
Alignment:
Q  558 gcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaaga 628  Q
    ||||| |||||||||  |||||| || ||||| |||||||||||||||||||| || || || ||||||||    
T  42730210 gcacagtatctaggaacagaaaaacctccaccgttgtttgcatcagattgtgttaatgtctttgcaaaaga 42730140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 575 - 629
Target Start/End: Complemental strand, 21715696 - 21715642
Alignment:
Q  575 agaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagat 629  Q
    |||||| || ||||||||||||||||||||||| ||||| || || |||||||||    
T  21715696 agaaaaccccccaccattgtttgcatcagattgagtcaaagtcttagcaaaagat 21715642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University