View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8925_high_4 (Length: 207)
Name: NF8925_high_4
Description: NF8925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8925_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 4e-80; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 7900949 - 7901123
Alignment:
| Q |
1 |
taaagtagcaaaatcaaacacgcaacaaagctgagtgatatagttctaaaaatcttgctacaacatcatcacaaatagaacagtaatggatcgtgaattc |
100 |
Q |
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| T |
7900949 |
taaagtagcaaaatcaaacacacaacaaagctgagtgatatagttctaaaaatcttgctacaacatcatcacaaatagaacagtaatgaatcgtgaattc |
7901048 |
T |
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| Q |
101 |
aattaatattttgtttgaagtaaaatgtatacattaaagagacaaacatagatcaatcacaacaaattcaagttt |
175 |
Q |
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| T |
7901049 |
aattaatattttgtttgaagtaaaatgtatacattaaagagatataaatagatcaatcacaacaaatccaagttt |
7901123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 8004157 - 8003982
Alignment:
| Q |
1 |
taaagtagcaaaatcaaacacgcaacaaagctgagtgatatagttctaaaaatcttgctacaacatcatcacaaatagaacagtaatggatcgtgaattc |
100 |
Q |
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| T |
8004157 |
taaagcaggaaaaacaaacacgcaacaaagctgagtgatatagttccaaaagtcttgccacaacatcatcacaaatagaacagtaatgaatcgtgaattc |
8004058 |
T |
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| Q |
101 |
aattaatattttgtttgaagtaaaatgtatacattaaagagacaaacatagatcaatcacaacaaattcaagtttc |
176 |
Q |
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| T |
8004057 |
aattaatattttgtttgaagtaaaatgtatacattaaagagacagacatagatcaatcacaacaaattcaagtttc |
8003982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 95 - 176
Target Start/End: Original strand, 7904498 - 7904579
Alignment:
| Q |
95 |
gaattcaattaatattttgtttgaagtaaaatgtatacattaaagagacaaacatagatcaatcacaacaaattcaagtttc |
176 |
Q |
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| T |
7904498 |
gaattcaattaatattttgtttgaagtaaaatgtatacattaaagagacagacatagatcaatcacaacaaattcaagtttc |
7904579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 95 - 175
Target Start/End: Original strand, 7902873 - 7902954
Alignment:
| Q |
95 |
gaattcaattaatattttgtttgaagtaaaatgta-tacattaaagagacaaacatagatcaatcacaacaaattcaagttt |
175 |
Q |
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| T |
7902873 |
gaattcaattaatattttgtttgaagtaaaatgtattacattaaagagatataaatagatcaatcacaacaaatccaagttt |
7902954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 76 - 176
Target Start/End: Complemental strand, 51518446 - 51518346
Alignment:
| Q |
76 |
tagaacagtaatggatcgtgaattcaattaatattttgtttgaagtaaaatgtatacattaaagagacaaacatagatcaatcacaacaaattcaagttt |
175 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| || ||| | | ||| | |||||||||||||| ||||||| |
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| T |
51518446 |
tagaacagtaatggaatgtgaattcaattaatattttgtttgaaataaaatgtatacatttaacagatagaaatataacaatcacaacaaatccaagttt |
51518347 |
T |
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| Q |
176 |
c |
176 |
Q |
| |
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| |
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| T |
51518346 |
c |
51518346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 133
Target Start/End: Original strand, 1300798 - 1300855
Alignment:
| Q |
76 |
tagaacagtaatggatcgtgaattcaattaatattttgtttgaagtaaaatgtataca |
133 |
Q |
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| T |
1300798 |
tagaaccgtaatggatcaggaattcaattaatatttattttgaaataaaatgtataca |
1300855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 1300703 - 1300778
Alignment:
| Q |
3 |
aagtagcaaaatcaaacacgcaacaaagctgagtgatatagttctaaaaatcttgctacaacatcatcacaaataga |
79 |
Q |
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||||||||||| |||| || ||||||||| || |||||||||||||||||||||| | || ||| |||||||||| |
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| T |
1300703 |
aagtagcaaaa-caaagacacaacaaagccaagagatatagttctaaaaatcttgccatgacgtcagcacaaataga |
1300778 |
T |
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