View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8925_low_1 (Length: 340)
Name: NF8925_low_1
Description: NF8925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8925_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 16790276 - 16790003
Alignment:
| Q |
1 |
tcaatgcaaatagttgaaaatagaatataaaaccatttacctttttatcataagtgaagtgagatacaagattctgattgatagtcactgcattgtacat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
16790276 |
tcaatgcaaatagttgaaaatagaatataaaaccatttacctttttatcataagtgaagtgagatacaaggttctgatcgatagtcactgcattgtacat |
16790177 |
T |
|
| Q |
101 |
gattttaacaagcgacccttcactatgttccgtctctactcctagtgcactttcaacattttccttttcagcaataaccatctcatagtcaaacaatcga |
200 |
Q |
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||||||||||| || |||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16790176 |
gattttaacaattgatccttcactatgttcggtcgctactcctagcgcactttcaacattttccttttcagcaataaccatctcatagtcaaacaatcga |
16790077 |
T |
|
| Q |
201 |
tcgtttatgnnnnnnnatttccactatatgattcttgcaagaagtgagagaaaataatgacgtactcatagatttc |
276 |
Q |
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||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |
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| T |
16790076 |
tcgtttatgtttttttatttccactatatgattcttgcaagaagt--gagaaaataatgacatactcgtagatttc |
16790003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 16791682 - 16791409
Alignment:
| Q |
1 |
tcaatgcaaatagttgaaaatagaatataaaaccatttacctttttatcataagtgaagtgagatacaagattctgattgatagtcactgcattgtacat |
100 |
Q |
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|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
16791682 |
tcaatgcaaatagttgaaaatagaatataaaatcacttacctttttatcataagtgaagtgagatacatggttctgattgatagtcactgcattgtacat |
16791583 |
T |
|
| Q |
101 |
gattttaacaagcgacccttcactatgttccgtctctactcctagtgcactttcaacattttccttttcagcaataaccatctcatagtcaaacaatcga |
200 |
Q |
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| T |
16791582 |
gattttaatacgtgacccttcactttgttcgatggctactcctaatgcactttcaatattttccttttcagcgataaccatctcatagtc-gagaatcga |
16791484 |
T |
|
| Q |
201 |
tcgtttatgnnnnnnnatttccactatatgattcttgcaagaagtgagagaaaataatgacgtactcatagatttc |
276 |
Q |
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| ||||||| |||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
16791483 |
ttgtttatg-ttttttatttccactaaaagattcttgcaagaagtgagagaaaataatgacatactcatagatttc |
16791409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 16616799 - 16616999
Alignment:
| Q |
1 |
tcaatgcaaatagttgaaaatagaatataaaaccatttacctttttatcataagtgaagtgagatacaagattctgattgatagtcactgcattgtacat |
100 |
Q |
| |
|
|||||||||||| || |||| ||||||||||| ||||||||||||||||| |||| |||||||||||||| || |||||||||| ||||||||||||||| |
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| T |
16616799 |
tcaatgcaaataattcaaaacagaatataaaatcatttacctttttatcagaagtaaagtgagatacaaggttttgattgatagacactgcattgtacat |
16616898 |
T |
|
| Q |
101 |
gattttaacaagcgacccttcactatgttccgtctctactcctagtgcactttcaacattttccttttcagcaataaccatctcatagtcaaacaatcga |
200 |
Q |
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| T |
16616899 |
aattttcacaagtaatccttcactttgttcggcagctactccaactacactttcaacaatttcctttttagcgataaccacctcactgtcgaacaatcga |
16616998 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
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| |
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|
| T |
16616999 |
t |
16616999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 16628499 - 16628699
Alignment:
| Q |
1 |
tcaatgcaaatagttgaaaatagaatataaaaccatttacctttttatcataagtgaagtgagatacaagattctgattgatagtcactgcattgtacat |
100 |
Q |
| |
|
|||| ||||||| || ||| ||||||||||| |||||||||||||||| ||||||||||||||||||| || |||||||| ||||||||||||||||| |
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| T |
16628499 |
tcaacgcaaataattccaaacagaatataaaaacatttacctttttatcggaagtgaagtgagatacaaggttttgattgatggtcactgcattgtacat |
16628598 |
T |
|
| Q |
101 |
gattttaacaagcgacccttcactatgttccgtctctactcctagtgcactttcaacattttccttttcagcaataaccatctcatagtcaaacaatcga |
200 |
Q |
| |
|
|||||||||||| | ||| || ||||| | ||| ||||| | ||||||||||||||||||||| | ||||||| |||| |||||||||||||| |
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| T |
16628599 |
gattttaacaagtaatcctccaacttgttcggaagctaatcctactaacctttcaacattttccttttcaccgataaccacctcacagtcaaacaatcga |
16628698 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
|
| |
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|
| T |
16628699 |
t |
16628699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 16637380 - 16637580
Alignment:
| Q |
1 |
tcaatgcaaatagttgaaaatagaatataaaaccatttacctttttatcataagtgaagtgagatacaagattctgattgatagtcactgcattgtacat |
100 |
Q |
| |
|
|||| ||||||| || ||| ||||||||||| |||||||||||||||| ||||||||||||||||||| || |||||||| ||||||||||||||||| |
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| T |
16637380 |
tcaacgcaaataattccaaacagaatataaaaacatttacctttttatcggaagtgaagtgagatacaaggttttgattgatggtcactgcattgtacat |
16637479 |
T |
|
| Q |
101 |
gattttaacaagcgacccttcactatgttccgtctctactcctagtgcactttcaacattttccttttcagcaataaccatctcatagtcaaacaatcga |
200 |
Q |
| |
|
|||||||||||| | ||| || ||||| | ||| ||||| | ||||||||||||||||||||| | ||||||| |||| |||||||||||||| |
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| T |
16637480 |
gattttaacaagtaatcctccaacttgttcggaagctaatcctactaacctttcaacattttccttttcaccgataaccacctcacagtcaaacaatcga |
16637579 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
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| |
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| T |
16637580 |
t |
16637580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 16792446 - 16792645
Alignment:
| Q |
9 |
aatagttgaaaatagaatataaaaccatttacctttttatcataagtgaagtgagatacaagattctgattgatagtcactgcattgtacatgattttaa |
108 |
Q |
| |
|
|||| ||||||| | ||||||||| ||||||| ||||||||| || |||||||||||||| | | ||||||||||||| |||| ||||||||||||||| |
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|
| T |
16792446 |
aataattgaaaacataatataaaatcatttacatttttatcagaaatgaagtgagatacatggctttgattgatagtcattgcaatgtacatgattttaa |
16792545 |
T |
|
| Q |
109 |
caagcgacccttcactatgttccgtctctactcctagtgcactttcaacattttccttttcagcaataaccatctcatagtcaaacaatcgatcgtttat |
208 |
Q |
| |
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|||| | | |||| | ||||| |||||||||| |||||||| | ||||||||||||| | ||||||| ||||| |||||||||| ||| |||||| |
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|
| T |
16792546 |
caagtaatcattcaatttgttcgaaagctactcctagcgcactttc-atattttccttttcaacgataaccacctcattgtcaaacaattgattgtttat |
16792644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 16790533 - 16790733
Alignment:
| Q |
9 |
aatagttgaaaatagaatataaaaccatttaccttttt-atcataagtgaagtgagatacaagattctgattgatagtcactgcattgtacatgatttta |
107 |
Q |
| |
|
||||||| |||| | ||||||||| ||||||| ||||| |||| ||||||| ||||||||| | | ||||||||||||| ||||||||||||||||||| |
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| T |
16790533 |
aatagttcaaaagataatataaaatcatttacattttttatcagaagtgaaatgagatacatggctttgattgatagtcattgcattgtacatgatttta |
16790632 |
T |
|
| Q |
108 |
acaagcgacccttcactatgttccgtctctactcctagtgcactttcaacattttccttttcagcaataaccatctcatagtcaaacaatcgatcgttta |
207 |
Q |
| |
|
||||| | | |||| | ||||| |||||||||| |||||||| | ||||||| ||||| | ||||||| ||||| |||||||||| ||| ||||| |
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| T |
16790633 |
acaagtaatcattcaatttgttcgaaagctactcctagcgcactttc-atattttccctttcaacgataaccacctcattgtcaaacaattgattgttta |
16790731 |
T |
|
| Q |
208 |
tg |
209 |
Q |
| |
|
|| |
|
|
| T |
16790732 |
tg |
16790733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 38877337 - 38877436
Alignment:
| Q |
9 |
aatagttgaaaatagaatataaaaccatttacctttttatcataagtgaagtgagatacaagattctgattgatagtcactgcattgtacatgattttaa |
108 |
Q |
| |
|
||||||| |||| |||||||||||||||| |||||||||||||| || |||||||||||||| | |||||| |||||||||||||||||||||||||||| |
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|
| T |
38877337 |
aatagttcaaaacagaatataaaaccattcacctttttatcatatgtcaagtgagatacaaggtcctgattcatagtcactgcattgtacatgattttaa |
38877436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 209
Target Start/End: Original strand, 38877450 - 38877513
Alignment:
| Q |
146 |
tgcactttcaacattttccttttcagcaataaccatctcatagtcaaacaatcgatcgtttatg |
209 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||| |||| |||| |||||| ||| ||||||| |
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|
| T |
38877450 |
tgcactttcaacattttcctgttcagcgataaccacctcacagtcgaacaattgattgtttatg |
38877513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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