View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8925_low_6 (Length: 263)
Name: NF8925_low_6
Description: NF8925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8925_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 54147008 - 54146778
Alignment:
| Q |
17 |
atttagaaaaaacaccaatcgaccaaaaggattggaaacaaaaataaccaagaagccaacataccgtaaaagcaagcagcataaagaggaaaccttcaca |
116 |
Q |
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| T |
54147008 |
atttagaaaaaacaccaatcgaccaaaaggattggaaacaaaaataaccaagaagccaacataccgtaaaagcaagcaacataaagaggaaaccttcaca |
54146909 |
T |
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| Q |
117 |
tccaccaatactgatctatcatcaacaagcaaatcaaacatatcccaaacttttgggattcgacagcggaagcgacaagcgattcaaggtggatcaaaac |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
54146908 |
tccaccaatactgatctatcatcaacaagcaaatcaaacatatcccaaacttttgggattcgacagcggaagcgacaagcggttcaaggcggatcaaaac |
54146809 |
T |
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| Q |
217 |
aagttctagatatcatgttaacaatgcatac |
247 |
Q |
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| T |
54146808 |
aagttctagatatcatgttaacaatacatac |
54146778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 24131996 - 24131939
Alignment:
| Q |
184 |
ggaagcgacaagcgattcaaggtggatcaaaacaagttctagatatcatgttaacaat |
241 |
Q |
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| T |
24131996 |
ggaagcgacaaacgattcaaggtggatcaaaacaagctcttgataccatgttaacaat |
24131939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 159 - 241
Target Start/End: Complemental strand, 50294903 - 50294821
Alignment:
| Q |
159 |
tcccaaacttttgggattcgacagcggaagcgacaagcgattcaaggtggatcaaaacaagttctagatatcatgttaacaat |
241 |
Q |
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| T |
50294903 |
tcccaaacttttgagattcgacagcggaagcgacaagtagtttaaggtggatcgaaacaagctttagatatcatgttaacaat |
50294821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 1175437 - 1175470
Alignment:
| Q |
159 |
tcccaaacttttgggattcgacagcggaagcgac |
192 |
Q |
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| T |
1175437 |
tcccaaacttttgggattcgacagcggaagcgac |
1175470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 241
Target Start/End: Original strand, 28064509 - 28064603
Alignment:
| Q |
146 |
caaatcaaacatatcccaaacttttgggat-tcgacagcggaagcgacaagcgattcaaggtggatcaaaacaagttctagatatcatgttaacaat |
241 |
Q |
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| T |
28064509 |
caaaccaaacacatcccatacttttgggaactcaatagcggaagcaacaagcagtttaaggtggatcaaaacaagctct--ataccatgttaacaat |
28064603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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