View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8925_low_7 (Length: 243)
Name: NF8925_low_7
Description: NF8925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8925_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 100 - 224
Target Start/End: Complemental strand, 26239191 - 26239067
Alignment:
| Q |
100 |
ttactcatacacaagaataagaaatgtataaaactataaagatgaaatagttttaaattaaaattgttttctaaggccacgatttatttctcctatagtt |
199 |
Q |
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| T |
26239191 |
ttactcatacacaagaataagaaatgtataaaactataaagatgaaatagttttaaattaaaattgttttctaaggccacgatttatttctcctatagtt |
26239092 |
T |
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| Q |
200 |
ttttgtgtaatgtaaacttccactc |
224 |
Q |
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| T |
26239091 |
ttttgtgtaatgtaaacttccactc |
26239067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 26239351 - 26239250
Alignment:
| Q |
1 |
attctgttttcctatcagtaaaagatcaaggtttacgatttattacttttatttaaaaatataacaacccatttgccaacgtcaacaataacacaacatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26239351 |
attctgttttcctatcagtaaaagatcaaggtttacgatttattacttttatttaaaaatataacaacccatttgccaacgtcaacaataacacaatatt |
26239252 |
T |
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| Q |
101 |
ta |
102 |
Q |
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|| |
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| T |
26239251 |
ta |
26239250 |
T |
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