View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8926_high_10 (Length: 351)

Name: NF8926_high_10
Description: NF8926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8926_high_10
NF8926_high_10
[»] chr1 (12 HSPs)
chr1 (15-169)||(12145696-12145853)
chr1 (166-351)||(12145316-12145502)
chr1 (224-274)||(52827358-52827408)
chr1 (233-274)||(35594228-35594269)
chr1 (223-274)||(14999296-14999346)
chr1 (223-274)||(52274979-52275030)
chr1 (223-274)||(24422811-24422862)
chr1 (223-274)||(39699806-39699856)
chr1 (223-265)||(43058805-43058847)
chr1 (224-274)||(52828110-52828160)
chr1 (223-256)||(33088656-33088689)
chr1 (223-271)||(45157248-45157296)
[»] chr4 (14 HSPs)
chr4 (224-274)||(25684945-25684995)
chr4 (224-274)||(10470557-10470607)
chr4 (225-274)||(1835143-1835192)
chr4 (224-274)||(48780259-48780309)
chr4 (224-265)||(5525379-5525420)
chr4 (224-272)||(13386572-13386620)
chr4 (223-274)||(1290237-1290288)
chr4 (223-274)||(8758876-8758927)
chr4 (223-274)||(31599800-31599851)
chr4 (223-274)||(49308066-49308116)
chr4 (223-274)||(52491646-52491697)
chr4 (224-274)||(10471428-10471478)
chr4 (224-274)||(25685862-25685912)
chr4 (237-274)||(21539124-21539161)
[»] chr8 (11 HSPs)
chr8 (225-274)||(22221405-22221454)
chr8 (225-274)||(22227747-22227796)
chr8 (223-265)||(23170038-23170080)
chr8 (223-274)||(1823563-1823614)
chr8 (223-274)||(1858008-1858059)
chr8 (223-274)||(11287787-11287838)
chr8 (228-274)||(24483154-24483200)
chr8 (225-274)||(10006355-10006404)
chr8 (225-274)||(10007804-10007853)
chr8 (237-274)||(45114569-45114606)
chr8 (238-274)||(11288914-11288950)
[»] chr7 (13 HSPs)
chr7 (223-272)||(48934942-48934991)
chr7 (224-274)||(17781672-17781722)
chr7 (224-271)||(3227121-3227168)
chr7 (224-274)||(3227634-3227684)
chr7 (223-265)||(18372496-18372538)
chr7 (224-274)||(31949333-31949383)
chr7 (224-274)||(17782593-17782643)
chr7 (223-265)||(31659643-31659685)
chr7 (224-274)||(47524536-47524586)
chr7 (235-272)||(769426-769463)
chr7 (225-274)||(7500466-7500514)
chr7 (225-274)||(7501893-7501942)
chr7 (237-274)||(20163609-20163646)
[»] scaffold0294 (1 HSPs)
scaffold0294 (223-274)||(5477-5528)
[»] chr6 (11 HSPs)
chr6 (224-274)||(3722547-3722597)
chr6 (223-274)||(16704536-16704587)
chr6 (224-274)||(3721623-3721673)
chr6 (223-268)||(26574636-26574681)
chr6 (224-274)||(8659276-8659326)
chr6 (224-274)||(8660244-8660293)
chr6 (224-274)||(8821884-8821934)
chr6 (223-265)||(17496817-17496859)
chr6 (224-257)||(8822833-8822866)
chr6 (225-274)||(12382752-12382801)
chr6 (225-265)||(1829644-1829684)
[»] chr3 (15 HSPs)
chr3 (224-274)||(47609708-47609758)
chr3 (224-274)||(51469983-51470033)
chr3 (237-274)||(535835-535872)
chr3 (223-272)||(55192034-55192083)
chr3 (238-274)||(29931237-29931273)
chr3 (238-274)||(29980391-29980427)
chr3 (223-274)||(7758413-7758464)
chr3 (223-274)||(19984860-19984911)
chr3 (223-274)||(49216258-49216309)
chr3 (223-274)||(54539766-54539817)
chr3 (223-274)||(54540829-54540880)
chr3 (223-265)||(12700193-12700235)
chr3 (224-274)||(47610620-47610670)
chr3 (237-265)||(8456497-8456525)
chr3 (237-273)||(52840657-52840693)
[»] chr5 (12 HSPs)
chr5 (225-274)||(25056422-25056471)
chr5 (223-274)||(28538687-28538738)
chr5 (223-265)||(28539859-28539901)
chr5 (224-265)||(5777919-5777960)
chr5 (225-274)||(16650896-16650945)
chr5 (223-274)||(19752923-19752973)
chr5 (223-274)||(22940661-22940712)
chr5 (223-274)||(36486527-36486578)
chr5 (223-265)||(33158118-33158160)
chr5 (223-272)||(1796067-1796116)
chr5 (225-274)||(33160327-33160376)
chr5 (238-274)||(20216817-20216853)
[»] scaffold0186 (1 HSPs)
scaffold0186 (224-265)||(23099-23140)
[»] chr2 (6 HSPs)
chr2 (237-274)||(11938841-11938878)
chr2 (237-274)||(18868935-18868972)
chr2 (223-274)||(36449789-36449840)
chr2 (223-274)||(41879251-41879302)
chr2 (223-265)||(18300763-18300805)
chr2 (233-274)||(18797257-18797299)
[»] scaffold0019 (1 HSPs)
scaffold0019 (223-274)||(61498-61549)


Alignment Details
Target: chr1 (Bit Score: 132; Significance: 2e-68; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 15 - 169
Target Start/End: Complemental strand, 12145853 - 12145696
Alignment:
Q  15 acatcatgttgctgatattgatgctgaacctcacaactaatcacaaaggatagaaacttgtagtactaaaaagtctgaaagtgtgttcttctagtaata- 113  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||     
T  12145853 acatcatgttgctgatattgatgctgaacctcacaactaagcacaaaggatagaaacttgtagtactaaaaagtctaaaagtgtgttcttctagtaataa 12145754  T
Q  114 --ataagtatgaataaaacttcatgagaatatgaagtgtatgtggttgtaatagatat 169  Q
      ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  12145753 taataagtatgaataaaacttcatgagaatatgaagtgtatgtagttgtaatagatat 12145696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 166 - 351
Target Start/End: Original strand, 12145316 - 12145502
Alignment:
Q  166 atatataaattcataaattttaggttaaaatgcacttttctccccttccttttaaagtgtacttagagggtcaaaattgcaagtttttgaaaattagggg 265  Q
    |||||||||||||||||||||||||||||||||||||||   ||||  |||||||| || | ||||  | ||||||||| ||||||||||||||||| ||    
T  12145316 atatataaattcataaattttaggttaaaatgcactttttcgccctaacttttaaaatgcatttaggagatcaaaattgtaagtttttgaaaattagagg 12145415  T
Q  266 tggaaaagttagggagccaaaaattatgaattt-atactctggcatggaaagtatttgcagttccatccattgaccttatctttgac 351  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12145416 tggaaaagttagggagccaaaaattatgaattttatactctggcatggaaagtatttgcagttccatccattgaccttatctttgac 12145502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 224 - 274
Target Start/End: Complemental strand, 52827408 - 52827358
Alignment:
Q  224 gtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    |||||||| ||||||||||||||||||||||||| ||||||| ||||||||    
T  52827408 gtacttagggggtcaaaattgcaagtttttgaaagttagggggggaaaagt 52827358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 274
Target Start/End: Complemental strand, 35594269 - 35594228
Alignment:
Q  233 gggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  35594269 gggtcaaaattgcaagtttttgaaagttaggggtggaaaagt 35594228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 14999346 - 14999296
Alignment:
Q  223 tgtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    ||||||||| ||||||||||||||||||||||||| ||||||| ||||||||    
T  14999346 tgtacttagggggtcaaaattgcaagtttttgaaagttagggg-ggaaaagt 14999296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 52275030 - 52274979
Alignment:
Q  223 tgtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    ||||||||| ||||||||||||||||||||||||| ||||||| | ||||||    
T  52275030 tgtacttagggggtcaaaattgcaagtttttgaaagttaggggggtaaaagt 52274979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 24422862 - 24422811
Alignment:
Q  223 tgtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    ||||||||| ||||||||||||||||||||||||| ||| ||| | ||||||    
T  24422862 tgtacttagggggtcaaaattgcaagtttttgaaagttaagggggtaaaagt 24422811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 274
Target Start/End: Original strand, 39699806 - 39699856
Alignment:
Q  223 tgtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    ||||||||| |||||||||||||||||| |||||| ||||||| ||||||||    
T  39699806 tgtacttagggggtcaaaattgcaagttattgaaagttagggg-ggaaaagt 39699856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 265
Target Start/End: Complemental strand, 43058847 - 43058805
Alignment:
Q  223 tgtacttagagggtcaaaattgcaagtttttgaaaattagggg 265  Q
    ||||||||| ||||||||||||||||||||| ||| |||||||    
T  43058847 tgtacttagggggtcaaaattgcaagtttttcaaagttagggg 43058805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 274
Target Start/End: Original strand, 52828110 - 52828160
Alignment:
Q  224 gtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    |||||||| | | |||||||||||||||||||||||||| || ||||||||    
T  52828110 gtacttagggagccaaaattgcaagtttttgaaaattagagggggaaaagt 52828160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 256
Target Start/End: Original strand, 33088656 - 33088689
Alignment:
Q  223 tgtacttagagggtcaaaattgcaagtttttgaa 256  Q
    |||||||| |||||||||||||||||||||||||    
T  33088656 tgtacttaaagggtcaaaattgcaagtttttgaa 33088689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 271
Target Start/End: Original strand, 45157248 - 45157296
Alignment:
Q  223 tgtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaa 271  Q
    ||||| ||| ||| ||||||||||||||||||||| ||||||| |||||    
T  45157248 tgtacatagggggccaaaattgcaagtttttgaaacttagggggggaaa 45157296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 274
Target Start/End: Complemental strand, 25684995 - 25684945
Alignment:
Q  224 gtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  25684995 gtacttagagggtcaaaattgcaagtttttgaaagttagggggggaaaagt 25684945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 224 - 274
Target Start/End: Complemental strand, 10470607 - 10470557
Alignment:
Q  224 gtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    |||||||||||||||||||||||||||||||||| ||| ||| ||||||||    
T  10470607 gtacttagagggtcaaaattgcaagtttttgaaagttaaggggggaaaagt 10470557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 274
Target Start/End: Original strand, 1835143 - 1835192
Alignment:
Q  225 tacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    ||||||| ||||||||||||||||||||||||| |||||| |||||||||    
T  1835143 tacttagggggtcaaaattgcaagtttttgaaagttagggatggaaaagt 1835192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 274
Target Start/End: Complemental strand, 48780309 - 48780259
Alignment:
Q  224 gtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    |||||||| ||||||||||||||||||||| ||| ||||||| ||||||||    
T  48780309 gtacttagggggtcaaaattgcaagtttttaaaagttagggggggaaaagt 48780259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 5525420 - 5525379
Alignment:
Q  224 gtacttagagggtcaaaattgcaagtttttgaaaattagggg 265  Q
    |||||||| ||||||||||||||||||||||||| |||||||    
T  5525420 gtacttagggggtcaaaattgcaagtttttgaaagttagggg 5525379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 272
Target Start/End: Original strand, 13386572 - 13386620
Alignment:
Q  224 gtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaa 272  Q
    |||||||  ||||||||||||||||||||||||| ||||||| ||||||    
T  13386572 gtacttatggggtcaaaattgcaagtttttgaaagttagggggggaaaa 13386620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 274
Target Start/End: Original strand, 1290237 - 1290288
Alignment:
Q  223 tgtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    ||||||||||||| |||||||||||| |||||||| ||| ||| ||||||||    
T  1290237 tgtacttagagggccaaaattgcaagattttgaaagttaaggggggaaaagt 1290288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 274
Target Start/End: Original strand, 8758876 - 8758927
Alignment:
Q  223 tgtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    ||||||||| ||| ||||||||||||||||||||| ||| ||| ||||||||    
T  8758876 tgtacttagggggccaaaattgcaagtttttgaaagttaaggggggaaaagt 8758927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 31599851 - 31599800
Alignment:
Q  223 tgtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    ||||||||| ||||||||||||||||||||| ||| ||||||| | ||||||    
T  31599851 tgtacttagggggtcaaaattgcaagtttttaaaagttaggggggaaaaagt 31599800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 274
Target Start/End: Original strand, 49308066 - 49308116
Alignment:
Q  223 tgtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    ||||||||| ||| ||||||||||||||||||||| ||||||| ||||||||    
T  49308066 tgtacttagggggccaaaattgcaagtttttgaaagttagggg-ggaaaagt 49308116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 274
Target Start/End: Original strand, 52491646 - 52491697
Alignment:
Q  223 tgtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    |||| |||||||  ||||||||||||||||||||| ||| ||||||||||||    
T  52491646 tgtatttagaggaccaaaattgcaagtttttgaaagttaagggtggaaaagt 52491697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 274
Target Start/End: Original strand, 10471428 - 10471478
Alignment:
Q  224 gtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    |||||||| ||| ||||||||||||||||||||| ||| ||| ||||||||    
T  10471428 gtacttagggggccaaaattgcaagtttttgaaagttaaggggggaaaagt 10471478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 274
Target Start/End: Original strand, 25685862 - 25685912
Alignment:
Q  224 gtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    |||||||| ||| ||||||||||||||||||||| |||| || ||||||||    
T  25685862 gtacttagggggccaaaattgcaagtttttgaaagttagagggggaaaagt 25685912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 274
Target Start/End: Original strand, 21539124 - 21539161
Alignment:
Q  237 caaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  21539124 caaaattgcaagtttttaaaaattaagggtggaaaagt 21539161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 225 - 274
Target Start/End: Original strand, 22221405 - 22221454
Alignment:
Q  225 tacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  22221405 tacttagggggtcaaaattgcaagtttttgaaagttaggggtggaaaagt 22221454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 225 - 274
Target Start/End: Original strand, 22227747 - 22227796
Alignment:
Q  225 tacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  22227747 tacttagggggtcaaaattgcaagtttttgaaagttaggggtggaaaagt 22227796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 265
Target Start/End: Original strand, 23170038 - 23170080
Alignment:
Q  223 tgtacttagagggtcaaaattgcaagtttttgaaaattagggg 265  Q
    ||||||||| || ||||||||||||||||||||||||||||||    
T  23170038 tgtacttaggggatcaaaattgcaagtttttgaaaattagggg 23170080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 1823614 - 1823563
Alignment:
Q  223 tgtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    ||||||||||||||||||||||||||||||| ||| ||| ||| | ||||||    
T  1823614 tgtacttagagggtcaaaattgcaagtttttaaaagttaagggggaaaaagt 1823563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 1858059 - 1858008
Alignment:
Q  223 tgtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    ||||||||||||||||||||||||||||||| ||| ||| ||| | ||||||    
T  1858059 tgtacttagagggtcaaaattgcaagtttttaaaagttaagggggaaaaagt 1858008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 11287838 - 11287787
Alignment:
Q  223 tgtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    ||||||||| ||| ||||||||||||||||| ||| ||||||||| ||||||    
T  11287838 tgtacttagtgggccaaaattgcaagttttttaaagttaggggtgaaaaagt 11287787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 274
Target Start/End: Complemental strand, 24483200 - 24483154
Alignment:
Q  228 ttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    |||| ||| ||||||||||||||||||||||||||| | ||||||||    
T  24483200 ttagggggccaaaattgcaagtttttgaaaattaggaggggaaaagt 24483154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 274
Target Start/End: Complemental strand, 10006404 - 10006355
Alignment:
Q  225 tacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    ||||||| ||| ||||||||||||||||||||| |||| || ||||||||    
T  10006404 tacttagggggccaaaattgcaagtttttgaaagttagagggggaaaagt 10006355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 274
Target Start/End: Original strand, 10007804 - 10007853
Alignment:
Q  225 tacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    ||||||| ||| ||||||||||||||||||||| ||| ||| ||||||||    
T  10007804 tacttagggggccaaaattgcaagtttttgaaagttaaggggggaaaagt 10007853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 274
Target Start/End: Original strand, 45114569 - 45114606
Alignment:
Q  237 caaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    ||||||||||||||||||||| ||||||| ||||||||    
T  45114569 caaaattgcaagtttttgaaagttaggggcggaaaagt 45114606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 11288914 - 11288950
Alignment:
Q  238 aaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  11288914 aaaattgcaagtttttgaaagttaggggtgaaaaagt 11288950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 223 - 272
Target Start/End: Original strand, 48934942 - 48934991
Alignment:
Q  223 tgtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaa 272  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  48934942 tgtacttagagggtcaaaattacaagtttttgaaagttaggggtggaaaa 48934991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 224 - 274
Target Start/End: Complemental strand, 17781722 - 17781672
Alignment:
Q  224 gtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    |||||||| ||||||||||||||||||||||||| ||||||| ||||||||    
T  17781722 gtacttagggggtcaaaattgcaagtttttgaaagttagggggggaaaagt 17781672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 3227168 - 3227121
Alignment:
Q  224 gtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaa 271  Q
    |||||||| ||| ||||||||||||||||||||||||||||| |||||    
T  3227168 gtacttagggggccaaaattgcaagtttttgaaaattagggggggaaa 3227121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 274
Target Start/End: Original strand, 3227634 - 3227684
Alignment:
Q  224 gtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    |||||||| ||| ||||||||||||||||||||| ||||||| ||||||||    
T  3227634 gtacttagggggccaaaattgcaagtttttgaaagttagggggggaaaagt 3227684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 265
Target Start/End: Original strand, 18372496 - 18372538
Alignment:
Q  223 tgtacttagagggtcaaaattgcaagtttttgaaaattagggg 265  Q
    ||||||||| ||| |||||||||||||||||||||||||||||    
T  18372496 tgtacttagggggccaaaattgcaagtttttgaaaattagggg 18372538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 274
Target Start/End: Complemental strand, 31949383 - 31949333
Alignment:
Q  224 gtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    |||||||| ||| ||||||||||||||||||||||||||||  ||||||||    
T  31949383 gtacttagggggccaaaattgcaagtttttgaaaattagggagggaaaagt 31949333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 274
Target Start/End: Original strand, 17782593 - 17782643
Alignment:
Q  224 gtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    |||||||| ||| ||||||||||||||||||||| |||| || ||||||||    
T  17782593 gtacttagggggccaaaattgcaagtttttgaaagttagagggggaaaagt 17782643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 265
Target Start/End: Complemental strand, 31659685 - 31659643
Alignment:
Q  223 tgtacttagagggtcaaaattgcaagtttttgaaaattagggg 265  Q
    ||||||||| |||||||||||| |||||||||||| |||||||    
T  31659685 tgtacttagggggtcaaaattgtaagtttttgaaagttagggg 31659643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 274
Target Start/End: Complemental strand, 47524586 - 47524536
Alignment:
Q  224 gtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    |||||||| ||| ||||||||||||||||||||| |||| || ||||||||    
T  47524586 gtacttagggggccaaaattgcaagtttttgaaagttagagggggaaaagt 47524536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 272
Target Start/End: Complemental strand, 769463 - 769426
Alignment:
Q  235 gtcaaaattgcaagtttttgaaaattaggggtggaaaa 272  Q
    |||||||||||||||||||||||||||  |||||||||    
T  769463 gtcaaaattgcaagtttttgaaaattacaggtggaaaa 769426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 274
Target Start/End: Complemental strand, 7500514 - 7500466
Alignment:
Q  225 tacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    |||||||||| |||||||||||||||||||||| ||| ||| ||||||||    
T  7500514 tacttagaggatcaaaattgcaagtttttgaaagttaaggg-ggaaaagt 7500466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 274
Target Start/End: Original strand, 7501893 - 7501942
Alignment:
Q  225 tacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    ||||||| ||| ||||||||||||||||||||| |||| || ||||||||    
T  7501893 tacttagggggccaaaattgcaagtttttgaaagttagagggggaaaagt 7501942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 274
Target Start/End: Original strand, 20163609 - 20163646
Alignment:
Q  237 caaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  20163609 caaaattgcaagtttttgaaagttaggggtggagaagt 20163646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 274
Target Start/End: Original strand, 5477 - 5528
Alignment:
Q  223 tgtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    ||||||||  ||||||||||||||||||||||||||||||||| ||||||||    
T  5477 tgtacttaaggggtcaaaattgcaagtttttgaaaattagggggggaaaagt 5528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 224 - 274
Target Start/End: Original strand, 3722547 - 3722597
Alignment:
Q  224 gtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    |||||||||||||||||||||||||||||||||| ||||||  ||||||||    
T  3722547 gtacttagagggtcaaaattgcaagtttttgaaagttagggagggaaaagt 3722597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 274
Target Start/End: Original strand, 16704536 - 16704587
Alignment:
Q  223 tgtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    ||||||||| ||||||||||||||||||||||||| ||| ||| ||||||||    
T  16704536 tgtacttagggggtcaaaattgcaagtttttgaaagttaagggaggaaaagt 16704587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 274
Target Start/End: Complemental strand, 3721673 - 3721623
Alignment:
Q  224 gtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    |||||||| ||||||||||||||||||||||||| |||| || ||||||||    
T  3721673 gtacttagggggtcaaaattgcaagtttttgaaagttagagggggaaaagt 3721623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 26574681 - 26574636
Alignment:
Q  223 tgtacttagagggtcaaaattgcaagtttttgaaaattaggggtgg 268  Q
    |||||||||||| |||||||||||||||||||||| |||| |||||    
T  26574681 tgtacttagaggttcaaaattgcaagtttttgaaagttagaggtgg 26574636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 274
Target Start/End: Complemental strand, 8659326 - 8659276
Alignment:
Q  224 gtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    |||||||| ||| ||||||||||||||||||||| |||| || ||||||||    
T  8659326 gtacttagggggccaaaattgcaagtttttgaaagttagagggggaaaagt 8659276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 274
Target Start/End: Original strand, 8660244 - 8660293
Alignment:
Q  224 gtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    |||||||| ||||||||||||||||||||||||| ||||| | ||||||||    
T  8660244 gtacttag-gggtcaaaattgcaagtttttgaaagttaggaggggaaaagt 8660293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 274
Target Start/End: Complemental strand, 8821934 - 8821884
Alignment:
Q  224 gtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    |||||||| ||| ||||||||||||||||||||| |||| || ||||||||    
T  8821934 gtacttagggggccaaaattgcaagtttttgaaagttagagggggaaaagt 8821884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 265
Target Start/End: Complemental strand, 17496859 - 17496817
Alignment:
Q  223 tgtacttagagggtcaaaattgcaagtttttgaaaattagggg 265  Q
    |||||||||||||| ||||||| |||||||||||| |||||||    
T  17496859 tgtacttagagggttaaaattgtaagtttttgaaagttagggg 17496817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 257
Target Start/End: Original strand, 8822833 - 8822866
Alignment:
Q  224 gtacttagagggtcaaaattgcaagtttttgaaa 257  Q
    |||||||| |||||||||||||||||||||||||    
T  8822833 gtacttagggggtcaaaattgcaagtttttgaaa 8822866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 274
Target Start/End: Original strand, 12382752 - 12382801
Alignment:
Q  225 tacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    ||||||| ||||||||||| ||| ||||| |||||||| |||||||||||    
T  12382752 tacttagggggtcaaaattacaaatttttaaaaattagaggtggaaaagt 12382801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 265
Target Start/End: Original strand, 1829644 - 1829684
Alignment:
Q  225 tacttagagggtcaaaattgcaagtttttgaaaattagggg 265  Q
    ||||||| ||||||||||||||||||||| ||| |||||||    
T  1829644 tacttagggggtcaaaattgcaagtttttaaaagttagggg 1829684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 224 - 274
Target Start/End: Complemental strand, 47609758 - 47609708
Alignment:
Q  224 gtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    |||||||| ||||||||||||||||||||||||| ||||||| ||||||||    
T  47609758 gtacttagggggtcaaaattgcaagtttttgaaagttagggggggaaaagt 47609708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 274
Target Start/End: Complemental strand, 51470033 - 51469983
Alignment:
Q  224 gtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    |||||||| ||| ||||||||||||||||||||||||||||  ||||||||    
T  51470033 gtacttagggggccaaaattgcaagtttttgaaaattagggagggaaaagt 51469983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 274
Target Start/End: Original strand, 535835 - 535872
Alignment:
Q  237 caaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  535835 caaaattgcaagtttttgaaagttaggggtggaaaagt 535872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 272
Target Start/End: Original strand, 55192034 - 55192083
Alignment:
Q  223 tgtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaa 272  Q
    ||||||||||||| ||||||||||||||||||||| ||| ||| ||||||    
T  55192034 tgtacttagagggccaaaattgcaagtttttgaaagttaaggggggaaaa 55192083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 29931273 - 29931237
Alignment:
Q  238 aaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    |||||||||||||||||||| ||||||||||||||||    
T  29931273 aaaattgcaagtttttgaaagttaggggtggaaaagt 29931237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 29980427 - 29980391
Alignment:
Q  238 aaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    |||||||||||||||||||| ||||||||||||||||    
T  29980427 aaaattgcaagtttttgaaagttaggggtggaaaagt 29980391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 7758464 - 7758413
Alignment:
Q  223 tgtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    ||||||||| ||||||||||||||||||||||||| ||| ||| | ||||||    
T  7758464 tgtacttagggggtcaaaattgcaagtttttgaaagttaagggggaaaaagt 7758413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 19984911 - 19984860
Alignment:
Q  223 tgtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    ||||| ||| ||| ||||||||||||||||||||| ||||||| ||||||||    
T  19984911 tgtacatagggggccaaaattgcaagtttttgaaacttagggggggaaaagt 19984860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 49216309 - 49216258
Alignment:
Q  223 tgtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    ||||| ||| ||||||||||||||| ||||||||| ||||| ||||||||||    
T  49216309 tgtacatagggggtcaaaattgcaactttttgaaacttaggcgtggaaaagt 49216258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 54539817 - 54539766
Alignment:
Q  223 tgtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    |||| |||| |||| |||||||||||||||||||| ||| ||||||||||||    
T  54539817 tgtatttagggggttaaaattgcaagtttttgaaagttaagggtggaaaagt 54539766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 274
Target Start/End: Original strand, 54540829 - 54540880
Alignment:
Q  223 tgtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    ||||||||  ||||||||||||||||||||||||| ||| ||| ||||||||    
T  54540829 tgtacttaaggggtcaaaattgcaagtttttgaaagttaaggggggaaaagt 54540880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 265
Target Start/End: Complemental strand, 12700235 - 12700193
Alignment:
Q  223 tgtacttagagggtcaaaattgcaagtttttgaaaattagggg 265  Q
    ||||||||| ||| ||||||||||||||||||||| |||||||    
T  12700235 tgtacttagggggccaaaattgcaagtttttgaaagttagggg 12700193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 274
Target Start/End: Original strand, 47610620 - 47610670
Alignment:
Q  224 gtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    |||||||| ||| ||||||||||||||||||||| |||| || ||||||||    
T  47610620 gtacttagggggccaaaattgcaagtttttgaaagttagagggggaaaagt 47610670  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 265
Target Start/End: Complemental strand, 8456525 - 8456497
Alignment:
Q  237 caaaattgcaagtttttgaaaattagggg 265  Q
    |||||||||||||||||||||||||||||    
T  8456525 caaaattgcaagtttttgaaaattagggg 8456497  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 52840657 - 52840693
Alignment:
Q  237 caaaattgcaagtttttgaaaattaggggtggaaaag 273  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  52840657 caaaattgcaagtttttgaaagttaggggaggaaaag 52840693  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 274
Target Start/End: Original strand, 25056422 - 25056471
Alignment:
Q  225 tacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    ||||||| ||||||||||||||||||||||||| ||||| ||||||||||    
T  25056422 tacttagggggtcaaaattgcaagtttttgaaagttaggagtggaaaagt 25056471  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 28538738 - 28538687
Alignment:
Q  223 tgtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    ||||||||  ||||||||||||||||||||||||| ||| ||||||||||||    
T  28538738 tgtacttaaggggtcaaaattgcaagtttttgaaagttacgggtggaaaagt 28538687  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 265
Target Start/End: Original strand, 28539859 - 28539901
Alignment:
Q  223 tgtacttagagggtcaaaattgcaagtttttgaaaattagggg 265  Q
    ||||||||||||||||||||||||||||||| ||| |||||||    
T  28539859 tgtacttagagggtcaaaattgcaagtttttaaaagttagggg 28539901  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 5777960 - 5777919
Alignment:
Q  224 gtacttagagggtcaaaattgcaagtttttgaaaattagggg 265  Q
    |||||||| ||||||||||||||||||||||||| |||||||    
T  5777960 gtacttagggggtcaaaattgcaagtttttgaaagttagggg 5777919  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 274
Target Start/End: Original strand, 16650896 - 16650945
Alignment:
Q  225 tacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    ||||||| ||||||||||||||||||||| ||| ||| ||||||||||||    
T  16650896 tacttagggggtcaaaattgcaagtttttaaaagttaagggtggaaaagt 16650945  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 19752973 - 19752923
Alignment:
Q  223 tgtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    ||||||||| ||| ||||||||||||||||||||| ||||||| ||||||||    
T  19752973 tgtacttagggggccaaaattgcaagtttttgaaagttagggg-ggaaaagt 19752923  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 274
Target Start/End: Original strand, 22940661 - 22940712
Alignment:
Q  223 tgtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    ||||||||| ||| ||||||||||||||||||||| ||| ||| ||||||||    
T  22940661 tgtacttagggggccaaaattgcaagtttttgaaagttaaggggggaaaagt 22940712  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 274
Target Start/End: Original strand, 36486527 - 36486578
Alignment:
Q  223 tgtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    ||||||||| ||||||||||||||||||||| ||| ||||||| | ||||||    
T  36486527 tgtacttagggggtcaaaattgcaagtttttaaaagttaggggggaaaaagt 36486578  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 265
Target Start/End: Complemental strand, 33158160 - 33158118
Alignment:
Q  223 tgtacttagagggtcaaaattgcaagtttttgaaaattagggg 265  Q
    ||||||||| | ||||||||||||||||||||||| |||||||    
T  33158160 tgtacttagggtgtcaaaattgcaagtttttgaaagttagggg 33158118  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 272
Target Start/End: Complemental strand, 1796116 - 1796067
Alignment:
Q  223 tgtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaa 272  Q
    |||||||||  || |||| |||||||||||||||| ||||||||||||||    
T  1796116 tgtacttaggtggccaaagttgcaagtttttgaaagttaggggtggaaaa 1796067  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 274
Target Start/End: Original strand, 33160327 - 33160376
Alignment:
Q  225 tacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    ||||||| |||  |||||||||||||||||||||||| ||| ||||||||    
T  33160327 tacttagggggctaaaattgcaagtttttgaaaattaaggggggaaaagt 33160376  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 20216817 - 20216853
Alignment:
Q  238 aaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  20216817 aaaattgcaagtttttgaaaattaaggggggaaaagt 20216853  T

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Target: scaffold0186 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 23140 - 23099
Alignment:
Q  224 gtacttagagggtcaaaattgcaagtttttgaaaattagggg 265  Q
    |||||||||||| ||||||||||||||||||||| |||||||    
T  23140 gtacttagagggacaaaattgcaagtttttgaaagttagggg 23099  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 274
Target Start/End: Original strand, 11938841 - 11938878
Alignment:
Q  237 caaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  11938841 caaaattgcaagtttttgaaagttaggggtggaaaagt 11938878  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 274
Target Start/End: Complemental strand, 18868972 - 18868935
Alignment:
Q  237 caaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  18868972 caaaattgcaagtttttgaaagttaggggtggaaaagt 18868935  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 36449840 - 36449789
Alignment:
Q  223 tgtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    ||||||||| ||| ||||||||||||||||||||| ||| ||| ||||||||    
T  36449840 tgtacttagggggccaaaattgcaagtttttgaaagttaaggggggaaaagt 36449789  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 274
Target Start/End: Original strand, 41879251 - 41879302
Alignment:
Q  223 tgtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    ||||||||| ||| ||||||||||||||||||||||||| ||| | ||||||    
T  41879251 tgtacttagggggccaaaattgcaagtttttgaaaattaagggggaaaaagt 41879302  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 265
Target Start/End: Original strand, 18300763 - 18300805
Alignment:
Q  223 tgtacttagagggtcaaaattgcaagtttttgaaaattagggg 265  Q
    ||||||||| ||||||||||||||||||| ||||| |||||||    
T  18300763 tgtacttagggggtcaaaattgcaagtttatgaaagttagggg 18300805  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 274
Target Start/End: Complemental strand, 18797299 - 18797257
Alignment:
Q  233 gggtcaaaattgcaagtttttgaaaatta-ggggtggaaaagt 274  Q
    ||||||||||||||||||||||||| ||| |||||||||||||    
T  18797299 gggtcaaaattgcaagtttttgaaagttagggggtggaaaagt 18797257  T

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Target: scaffold0019 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 274
Target Start/End: Original strand, 61498 - 61549
Alignment:
Q  223 tgtacttagagggtcaaaattgcaagtttttgaaaattaggggtggaaaagt 274  Q
    ||||||||| |||  |||||||||||||||||||||||| ||| ||||||||    
T  61498 tgtacttagggggctaaaattgcaagtttttgaaaattaagggaggaaaagt 61549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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