View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8926_high_14 (Length: 310)
Name: NF8926_high_14
Description: NF8926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8926_high_14 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 15 - 310
Target Start/End: Complemental strand, 49535623 - 49535323
Alignment:
| Q |
15 |
aaaagctacattaattggtaactactgctctttttgaataaaactcactccttcccgttgactgatataataacagttcacagttcagagtgaaaacttc |
114 |
Q |
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| T |
49535623 |
aaaacctacattaattggtaactactgctctttttgaataaaactcactccttcccgttgactgatataataacagttcacagttcagagtgaaaacttc |
49535524 |
T |
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| Q |
115 |
atacaggctgatgtattatgtatagccatcaacgaaatttgtagaaatcaatta----ttccaaaaattgtactagttccccacaaaagtacgtagagaa |
210 |
Q |
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| T |
49535523 |
atacaggctgatgtattatgtatagccatcaacgaaatttgtacaaatcaattaatttttccaaaaattgtactagttccccacaaaagtacatagagaa |
49535424 |
T |
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| Q |
211 |
agacattgttgagatgaccttgtatcatttccacggtcataaatgaaggatgttaggacatactgtagcatgattttcacacacac-aaaaaaggctctt |
309 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
49535423 |
agacattgttgagatgaccttgtatcatttccacgatcataaatgaaggatgttaggacatactgtagcatgattttcacacacacaaaaaaaggctctt |
49535324 |
T |
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| Q |
310 |
c |
310 |
Q |
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| T |
49535323 |
c |
49535323 |
T |
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