View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8926_high_16 (Length: 292)
Name: NF8926_high_16
Description: NF8926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8926_high_16 |
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| [»] scaffold0007 (1 HSPs) |
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| [»] scaffold0933 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 6671360 - 6671262
Alignment:
| Q |
18 |
atcactttcatgatttcgtgtttgtttacttcgattttgccgacattaaatcaccacagataagtttactgttctctcttttaactatattttattgat |
116 |
Q |
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|||||||||||| ||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
6671360 |
atcactttcatggtttcgtgtttgtttaattcgaatttgccgacatcaaatcaccacagataagtttattgttctctcttttagctatattttattgat |
6671262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 6667688 - 6667590
Alignment:
| Q |
18 |
atcactttcatgatttcgtgtttgtttacttcgattttgccgacattaaatcaccacagataagtttactgttctctcttttaactatattttattgat |
116 |
Q |
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||||||||||| ||||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||| |||||||||||||| ||||||||||||||| |
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| T |
6667688 |
atcactttcatagtttcgtgtttgtttaattcgaatttgccgacatcaaatcaccacatataagtttattgttctctcttttagctatattttattgat |
6667590 |
T |
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Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 1788868 - 1788770
Alignment:
| Q |
18 |
atcactttcatgatttcgtgtttgtttacttcgattttgccgacattaaatcaccacagataagtttactgttctctcttttaactatattttattgat |
116 |
Q |
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|||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||| |||||| |||||||||||||| |
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| T |
1788868 |
atcactttcatggtttcgtgtttgtttacttcaattttgccgacatcaaatcaccacagataagtttattgttctcccttttagatatattttattgat |
1788770 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 31210044 - 31209946
Alignment:
| Q |
18 |
atcactttcatgatttcgtgtttgtttacttcgattttgccgacattaaatcaccacagataagtttactgttctctcttttaactatattttattgat |
116 |
Q |
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|||||||||||| ||| ||||||||||||||||||||| | ||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
31210044 |
atcactttcatggttttgtgtttgtttacttcgattttcctgacatcaaatcaccacagataagtttattgttctctcttttatctatattttattgat |
31209946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 31206608 - 31206512
Alignment:
| Q |
18 |
atcactttcatgatttcgtgtttgtttacttcgattttgccgacattaaatcaccacagataagtttactgt--tctctcttttaactatattttat |
112 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||| ||||||||||| |
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| T |
31206608 |
atcactttcatggtttcgtgtttgtttacttcgattttgccgacatcaaatcaccacagataagtttattgttctctctcttttagctatattttat |
31206512 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 2609557 - 2609517
Alignment:
| Q |
75 |
agataagtttactgttctctcttttaactatattttattga |
115 |
Q |
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| T |
2609557 |
agataagtttattgttctctcttttacctatattttattga |
2609517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 208
Target Start/End: Complemental strand, 31206477 - 31206448
Alignment:
| Q |
179 |
gtagataattcttatgactaattctacaac |
208 |
Q |
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| T |
31206477 |
gtagataattcttatgactaattctacaac |
31206448 |
T |
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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 116
Target Start/End: Original strand, 1043523 - 1043605
Alignment:
| Q |
34 |
cgtgtttgtttacttcgattttgccgacattaaatcaccacagataagtttactgttctctcttttaactatattttattgat |
116 |
Q |
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|||||||||||||||| ||||||| ||||| ||||| ||||||||||||||| |||| |||||| || ||||||||||||||| |
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| T |
1043523 |
cgtgtttgtttacttcaattttgctgacatcaaatccccacagataagtttattgttttctcttatagctatattttattgat |
1043605 |
T |
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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 8424611 - 8424653
Alignment:
| Q |
18 |
atcactttcatgatttcgtgtttgtttacttcgattttgccga |
60 |
Q |
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|||||||||||| ||| |||||||||||||| ||||||||||| |
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| T |
8424611 |
atcactttcatggtttagtgtttgtttactttgattttgccga |
8424653 |
T |
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Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 26274 - 26179
Alignment:
| Q |
18 |
atcactttcatgatttcgtgtttgtttacttcgattttgccgacattaaatcaccacagataagtttactgttctctcttttaactatattttattgat |
116 |
Q |
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|
|||||||||||| |||||| |||||||||||||| ||| | |||| |||||||| || ||||||| | ||| ||||||||| ||||||||||||||| |
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| T |
26274 |
atcactttcatggtttcgtatttgtttacttcgaattt-acaacatcaaatcaccgcaaataagttcattgt--tctcttttagctatattttattgat |
26179 |
T |
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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 3835629 - 3835586
Alignment:
| Q |
18 |
atcactttcatgatttcgtgtttgtttacttcgattttgccgac |
61 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
3835629 |
atcactctcatggtttcgtgtttgtttacttcgattttgccgac |
3835586 |
T |
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Target: scaffold0933 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0933
Description:
Target: scaffold0933; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 965 - 1006
Alignment:
| Q |
75 |
agataagtttactgttctctcttttaactatattttattgat |
116 |
Q |
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||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
965 |
agataagtttattgttctctcttttacctatattttattgat |
1006 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 31307373 - 31307320
Alignment:
| Q |
22 |
ctttcatgatttcgtgtttgtttacttcgattttgccgacattaaatcaccaca |
75 |
Q |
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|||| ||| ||||||||||||| ||||||||||||||||| | ||||||||||| |
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| T |
31307373 |
cttttatggtttcgtgtttgttcacttcgattttgccgacttcaaatcaccaca |
31307320 |
T |
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