View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8926_high_2 (Length: 609)
Name: NF8926_high_2
Description: NF8926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8926_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 565; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 15 - 595
Target Start/End: Complemental strand, 46047670 - 46047090
Alignment:
| Q |
15 |
tatggtggtagaatatagaaaataccctgaaagaacaggtttatgcgttgtaacaatgaactgtatttgctcttatgcttgaaatccaacactaatgtta |
114 |
Q |
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| T |
46047670 |
tatggtggtagaatatagaaaataccctgaaagaacaggtttatgcgttgtaacaatgaactgtatttgctcttatgcttgaaatccaacactaatgtta |
46047571 |
T |
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| Q |
115 |
ctttttctgaatttgattgctaatttttagttgtcaacaatatcatcaccacttttaaatttattgagattttagttggcttgcacatttatactccttt |
214 |
Q |
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| T |
46047570 |
ctttttctgaatttgattgctaagttttagttgtcaacaatatcatcaccacttttaaatttattgagattttagttggcttgcacatttttattccttt |
46047471 |
T |
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| Q |
215 |
gttgatatgtagttgatgagtaatttgctttgagaagagtctatgcaaatattttcgctttgtgagaaatcgataccacacaagtaaatggatgcggcct |
314 |
Q |
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| T |
46047470 |
gttgatatgtagttgatgagtaatttgctttgagaagagtctatgcaaatattttcgctttgtgagaaatcgatacgacacaagtaaatggatgcggcct |
46047371 |
T |
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| Q |
315 |
tttcctatcttccgtggtggttgtcgagtagaaaacatcaaaagccaaaaacctcaaatgggtgttcaacaaattcttcacctgattctgttacgaggga |
414 |
Q |
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| T |
46047370 |
tttcctatcttccgtggtggttgtcgagtagaaaacatcaaaagccaaaaacctcaaatgggtgttcaacaaattcttcacctgattctgttacgaggga |
46047271 |
T |
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| Q |
415 |
atcatcaaatgttttgagatttccttttgttaatgaggaaattgtgccttccacttcaagaaaggtgaaggacgaacgacatagtagggaagaggcgaaa |
514 |
Q |
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| T |
46047270 |
atcatcaaatgttttgagatttccttttgttaatgaggaaattgtgccttccacttcaagaaaggtgaaggacgaacgacatagtagggaagaggcgaaa |
46047171 |
T |
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| Q |
515 |
attgataaggaatgtgattttgttatcgttccgtttgatggtggattcgttgattctgacgctgaatctgttgcttctgat |
595 |
Q |
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| T |
46047170 |
attgataaggaatgtgattttgttatcgttccgtttgatggtggattcgttgattctgacgctgaatctgttgcttctgat |
46047090 |
T |
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