View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8926_high_28 (Length: 219)

Name: NF8926_high_28
Description: NF8926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8926_high_28
NF8926_high_28
[»] chr1 (13 HSPs)
chr1 (1-219)||(3544607-3544826)
chr1 (1-217)||(1248094-1248310)
chr1 (92-219)||(28358396-28358524)
chr1 (90-219)||(19014490-19014619)
chr1 (90-196)||(5809085-5809192)
chr1 (91-219)||(52691976-52692105)
chr1 (82-219)||(40563064-40563202)
chr1 (149-219)||(27393455-27393525)
chr1 (90-203)||(45795710-45795824)
chr1 (112-196)||(3074271-3074356)
chr1 (139-219)||(13867339-13867419)
chr1 (90-157)||(28097534-28097601)
chr1 (112-196)||(22191311-22191396)
[»] chr6 (15 HSPs)
chr6 (1-219)||(14843643-14843862)
chr6 (91-219)||(19350449-19350578)
chr6 (88-219)||(32186185-32186317)
chr6 (91-219)||(29976514-29976650)
chr6 (40-219)||(25350676-25350856)
chr6 (91-219)||(14686514-14686643)
chr6 (97-211)||(7956185-7956299)
chr6 (117-201)||(10362664-10362749)
chr6 (88-216)||(26514226-26514355)
chr6 (148-219)||(10919970-10920041)
chr6 (148-201)||(900385-900438)
chr6 (91-219)||(13086044-13086173)
chr6 (112-196)||(29056045-29056130)
chr6 (139-203)||(1104469-1104533)
chr6 (148-196)||(34434823-34434871)
[»] chr5 (15 HSPs)
chr5 (1-219)||(476628-476847)
chr5 (47-219)||(380362-380535)
chr5 (90-219)||(42259784-42259914)
chr5 (90-175)||(22176376-22176462)
chr5 (90-209)||(42039221-42039341)
chr5 (137-201)||(4297833-4297897)
chr5 (139-208)||(15862194-15862263)
chr5 (139-196)||(41590650-41590707)
chr5 (179-219)||(22437810-22437850)
chr5 (139-199)||(29572398-29572458)
chr5 (139-199)||(29573775-29573835)
chr5 (139-199)||(29575152-29575212)
chr5 (139-199)||(29576529-29576589)
chr5 (139-199)||(29577906-29577966)
chr5 (139-199)||(29579283-29579343)
[»] scaffold0043 (1 HSPs)
scaffold0043 (1-219)||(34115-34334)
[»] chr3 (12 HSPs)
chr3 (1-219)||(31675346-31675565)
chr3 (1-219)||(31920857-31921076)
chr3 (91-219)||(19875748-19875877)
chr3 (139-211)||(25024358-25024430)
chr3 (117-201)||(52250648-52250733)
chr3 (91-219)||(53941808-53941937)
chr3 (91-211)||(55367115-55367236)
chr3 (91-178)||(14307713-14307801)
chr3 (139-219)||(48930280-48930360)
chr3 (90-219)||(40513230-40513360)
chr3 (91-219)||(18381564-18381692)
chr3 (112-193)||(31547897-31547980)
[»] chr7 (17 HSPs)
chr7 (91-219)||(27218628-27218757)
chr7 (47-219)||(20349425-20349597)
chr7 (94-219)||(19544908-19545034)
chr7 (90-211)||(17504073-17504195)
chr7 (90-211)||(17549019-17549141)
chr7 (94-199)||(34103985-34104091)
chr7 (148-196)||(8752925-8752973)
chr7 (139-196)||(25018847-25018904)
chr7 (139-199)||(11341350-11341410)
chr7 (160-201)||(41805282-41805323)
chr7 (148-199)||(23054497-23054548)
chr7 (149-219)||(20918524-20918594)
chr7 (112-196)||(17056055-17056140)
chr7 (141-194)||(39658919-39658972)
chr7 (148-200)||(12308647-12308699)
chr7 (90-169)||(23887588-23887667)
chr7 (90-169)||(23898764-23898843)
[»] chr4 (10 HSPs)
chr4 (1-196)||(2071955-2072151)
chr4 (91-219)||(9690927-9691056)
chr4 (94-183)||(52617407-52617497)
chr4 (5-211)||(43516262-43516469)
chr4 (90-207)||(7098986-7099104)
chr4 (139-201)||(38296260-38296322)
chr4 (94-219)||(56337006-56337132)
chr4 (94-196)||(36183045-36183148)
chr4 (58-219)||(55725212-55725374)
chr4 (144-201)||(29328301-29328358)
[»] scaffold0189 (1 HSPs)
scaffold0189 (91-219)||(6593-6722)
[»] chr2 (6 HSPs)
chr2 (91-219)||(6823916-6824045)
chr2 (118-201)||(10689087-10689170)
chr2 (117-201)||(43310790-43310875)
chr2 (90-196)||(11196855-11196962)
chr2 (139-201)||(26146769-26146831)
chr2 (139-219)||(7301227-7301307)
[»] chr8 (11 HSPs)
chr8 (88-219)||(25193590-25193722)
chr8 (94-219)||(15439632-15439751)
chr8 (94-219)||(15530936-15531055)
chr8 (83-196)||(29721439-29721553)
chr8 (90-219)||(6245593-6245716)
chr8 (94-196)||(37165650-37165753)
chr8 (148-198)||(12332411-12332461)
chr8 (91-219)||(36025026-36025155)
chr8 (148-219)||(18187709-18187780)
chr8 (91-196)||(12341072-12341178)
chr8 (139-201)||(36492935-36492997)
[»] scaffold0048 (1 HSPs)
scaffold0048 (148-200)||(63824-63876)
[»] scaffold0026 (1 HSPs)
scaffold0026 (139-199)||(67634-67694)
[»] scaffold0061 (1 HSPs)
scaffold0061 (139-201)||(55216-55278)
[»] scaffold0017 (1 HSPs)
scaffold0017 (139-201)||(143356-143418)


Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 3544826 - 3544607
Alignment:
Q  1 cacctgtcataccaaaagtaagtagacacgccattacctacccttctcgaaacccgctccgcaaaccaactcccctcatcgtcacccatcccatccctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3544826 cacctgtcataccaaaagtaagtagacacgccattacctacccttctcgaaacccgctccgcaaaccaactcccctcatcgtcacccatcccatccctaa 3544727  T
Q  101 tcttcactacttccttccaccaagatgaagtactccgg-cccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaa 199  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3544726 tcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaa 3544627  T
Q  200 accatctctatctaccaaca 219  Q
    ||||||||||||||||||||    
T  3544626 accatctctatctaccaaca 3544607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 1248310 - 1248094
Alignment:
Q  1 cacctgtcataccaaaagtaagtagacacgccattacctacccttctcgaaacccgctccgcaaaccaactcccctcatcgtcacccatcccatccctaa 100  Q
    ||||||||||||||||||||||||| || |||||| ||||||||  |||| |||| |||| |||||||||||||| || | ||||||| |||||||||||    
T  1248310 cacctgtcataccaaaagtaagtagccaagccattccctaccctcttcgacaccctctcctcaaaccaactccccgcagcttcacccaccccatccctaa 1248211  T
Q  101 tcttcactacttccttccaccaagatgaagtactccggcccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaa 200  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||| || |||||||||||||    
T  1248210 tcttcactacttccctccaccaagatgaagtactccagcccctacctccaacctccctacctcctcaccatatctcgccaccaacagcctataccaaaaa 1248111  T
Q  201 ccatctctatctaccaa 217  Q
    ||| || |||| |||||    
T  1248110 ccacctttatccaccaa 1248094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 92 - 219
Target Start/End: Original strand, 28358396 - 28358524
Alignment:
Q  92 catccctaatcttcactacttccttccaccaagatgaagtactccggccccta-cctccaacctccctgcctcctcaccatatctcgctaccagcaccct 190  Q
    |||||||||||||| |||||||| |||||||||||||   ||||||||||| | |||||||||||||||||||||||||||||||||| |||| ||||||    
T  28358396 catccctaatcttcgctacttccctccaccaagatgagacactccggcccccaacctccaacctccctgcctcctcaccatatctcgccaccaacaccct 28358495  T
Q  191 ataccaaaaaccatctctatctaccaaca 219  Q
     |||||||| ||  |||||||||||||||    
T  28358496 gtaccaaaacccgcctctatctaccaaca 28358524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 90 - 219
Target Start/End: Complemental strand, 19014619 - 19014490
Alignment:
Q  90 cccatccctaatcttcactacttccttccaccaagatgaagtactccggcccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccc 189  Q
    ||||||||||||||||||||  ||| |||||||||| |||  ||||||||||| |||||||||||||||| |||||||||||||||||| |||| |||      
T  19014619 cccatccctaatcttcactatctccctccaccaagaagaaacactccggccccaacctccaacctccctgtctcctcaccatatctcgccaccaacactt 19014520  T
Q  190 tataccaaaaaccatctctatctaccaaca 219  Q
     ||||||||| ||| |||| || |||||||    
T  19014519 aataccaaaacccacctctgtccaccaaca 19014490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 90 - 196
Target Start/End: Original strand, 5809085 - 5809192
Alignment:
Q  90 cccatccctaatcttcactacttccttccaccaagatgaagtactccgg-cccctacctccaacctccctgcctcctcaccatatctcgctaccagcacc 188  Q
    |||||||||||||||||||||||||| |||| ||||||||  ||||||| |||| ||||||||||||||  ||| | ||||||| | |||||| || |||    
T  5809085 cccatccctaatcttcactacttcctgccactaagatgaaacactccggcccccaacctccaacctcccaaccttcacaccataccgcgctacaagaacc 5809184  T
Q  189 ctatacca 196  Q
    ||||||||    
T  5809185 ctatacca 5809192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 52691976 - 52692105
Alignment:
Q  91 ccatccctaatcttcactacttccttccaccaagatgaagtactccggccc-ctacctccaacctccctgcctcctcaccatatctcgctaccagcaccc 189  Q
    |||||| |||||||| |||  ||| |||||||||| |||  |||||| ||| ||||| |||||||||| |||||||||||||| | ||| |||| |||||    
T  52691976 ccatccttaatcttcgctatctccctccaccaagaagaatcactccgaccctctaccaccaacctcccagcctcctcaccataccgcgccaccaacaccc 52692075  T
Q  190 tataccaaaaaccatctctatctaccaaca 219  Q
    ||||||| || || |||||||| |||||||    
T  52692076 tataccagaacccctctctatccaccaaca 52692105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 82 - 219
Target Start/End: Complemental strand, 40563202 - 40563064
Alignment:
Q  82 tcacccatcccatccctaatcttcactacttccttccaccaagatgaagtactccggccccta-cctccaacctccctgcctcctcaccatatctcgcta 180  Q
    |||||||  ||||||||||||||| |||  ||  ||||||||||||||  | ||||||||| | ||||||||||| ||||||| || ||||||||||| |    
T  40563202 tcacccactccatccctaatcttcgctatctctctccaccaagatgaaacagtccggcccccaacctccaacctctctgcctcatctccatatctcgcca 40563103  T
Q  181 ccagcaccctataccaaaaaccatctctatctaccaaca 219  Q
    |||  || |||||||| || || |||||||| |||||||    
T  40563102 ccaaaactctataccacaacccgtctctatccaccaaca 40563064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 219
Target Start/End: Complemental strand, 27393525 - 27393455
Alignment:
Q  149 caacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaaccatctctatctaccaaca 219  Q
    |||||||||||||||||||||||| || || |||| |||| ||||||| |||||  ||||||| |||||||    
T  27393525 caacctccctgcctcctcaccatacctagcaaccaacaccatataccataaacctcctctatcaaccaaca 27393455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 203
Target Start/End: Original strand, 45795710 - 45795824
Alignment:
Q  90 cccatccctaatcttcactacttccttccaccaagatgaagtactcc-ggcccctacctccaacctccctgcctcctcaccatatctcgctaccagcacc 188  Q
    |||||||||||||||| ||||||||  |||||||||||||  ||||| | |||| |||||||||| |||  ||  ||||||||| |  |||||||| |||    
T  45795710 cccatccctaatcttcgctacttcccgccaccaagatgaaacactcctgcccccaacctccaaccgcccaaccgtctcaccataccgtgctaccaggacc 45795809  T
Q  189 ctataccaaaaacca 203  Q
     ||||||| ||||||    
T  45795810 ttataccataaacca 45795824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 3074271 - 3074356
Alignment:
Q  112 tccttccaccaagatgaagtactccgg-cccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctatacca 196  Q
    ||||||||||| || |||  ||||||| |||| ||| ||||||||||  ||||||||||||| | |||||||| ||||||||||||    
T  3074271 tccttccaccacgaagaaacactccggtccccaaccgccaacctcccatcctcctcaccataacgcgctaccaacaccctatacca 3074356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 219
Target Start/End: Complemental strand, 13867419 - 13867339
Alignment:
Q  139 cccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaaccatctctatctaccaaca 219  Q
    |||| |||||||||| ||| |||  ||||||||| |  |||||||| ||||||||||| |||||| ||||||| |||||||    
T  13867419 ccccaacctccaaccgcccagccgtctcaccataccgagctaccaggaccctataccataaaccacctctatccaccaaca 13867339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 157
Target Start/End: Complemental strand, 28097601 - 28097534
Alignment:
Q  90 cccatccctaatcttcactacttccttccaccaagatgaagtactccggcccctacctccaacctccc 157  Q
    ||||||||||||| || | || ||| |||||||||| |||  ||||||||||| ||||||||||||||    
T  28097601 cccatccctaatcctcgccacctccctccaccaagaagaataactccggccccaacctccaacctccc 28097534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 22191396 - 22191311
Alignment:
Q  112 tccttccaccaagatgaagtactccggccccta-cctccaacctccctgcctcctcaccatatctcgctaccagcaccctatacca 196  Q
    ||||||||||| || |||  ||||||||||| | || ||||||||||  ||||||||||||| | ||| |||| ||||||||||||    
T  22191396 tccttccaccacgaagaaacactccggcccccaaccaccaacctcccatcctcctcaccataacacgccaccaacaccctatacca 22191311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 14843862 - 14843643
Alignment:
Q  1 cacctgtcataccaaaagtaagtagacacgccattacctacccttctcgaaacccgctccgcaaaccaactcccctcatcgtcacccatcccatccctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14843862 cacctgtcataccaaaagtaagtagacacgccattacctacccttctcgaaacccgctccgcaaaccaactcccctcatcgtcacccatcccatccctaa 14843763  T
Q  101 tcttcactacttccttccaccaagatgaagtactccg-gcccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaa 199  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14843762 tcttcactacttccttccaccaagatgaagtactccgtccccctacctccaacctccctgtctcctcaccatatctcgctaccagcaccctataccaaaa 14843663  T
Q  200 accatctctatctaccaaca 219  Q
    ||||||||||||||||||||    
T  14843662 accatctctatctaccaaca 14843643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 19350449 - 19350578
Alignment:
Q  91 ccatccctaatcttcactacttccttccaccaagatgaagtactccggccccta-cctccaacctccctgcctcctcaccatatctcgctaccagcaccc 189  Q
    ||||||||||||||| |||| |||||||||||||||||   ||||||||||| | |||||||||||||||||||||||||||||||||| |||| |||||    
T  19350449 ccatccctaatcttcgctacctccttccaccaagatgatacactccggcccccaacctccaacctccctgcctcctcaccatatctcgccaccaacaccc 19350548  T
Q  190 tataccaaaaaccatctctatctaccaaca 219  Q
    |||||||||| ||| ||||||||| |||||    
T  19350549 tataccaaaacccacctctatctatcaaca 19350578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 88 - 219
Target Start/End: Original strand, 32186185 - 32186317
Alignment:
Q  88 atcccatccctaatcttcactacttccttccaccaagatgaagtactccggccccta-cctccaacctccctgcctcctcaccatatctcgctaccagca 186  Q
    ||||||||||||||||||||||| ||| |||||||||| |||| ||||||||||| | ||||||||||||| ||| |||||| ||||||||| |||| ||    
T  32186185 atcccatccctaatcttcactacctccctccaccaagaagaagcactccggcccccaacctccaacctcccagccacctcactatatctcgccaccaaca 32186284  T
Q  187 ccctataccaaaaaccatctctatctaccaaca 219  Q
    ||||||||||||| ||| ||||||| |||||||    
T  32186285 ccctataccaaaacccacctctatccaccaaca 32186317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 91 - 219
Target Start/End: Complemental strand, 29976650 - 29976514
Alignment:
Q  91 ccatccctaatcttcactacttccttccaccaagatgaagtactccggccccta--------cctccaacctccctgcctcctcaccatatctcgctacc 182  Q
    ||||||||||||||| |||| |||||||||||||||||   ||||||||||| |        |||||||||||||||||||||||||||||||||| |||    
T  29976650 ccatccctaatcttcgctacctccttccaccaagatgatacactccggcccccaacccccaacctccaacctccctgcctcctcaccatatctcgccacc 29976551  T
Q  183 agcaccctataccaaaaaccatctctatctaccaaca 219  Q
    | ||||||||||||||| ||| ||||||||| |||||    
T  29976550 aacaccctataccaaaacccacctctatctatcaaca 29976514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 40 - 219
Target Start/End: Original strand, 25350676 - 25350856
Alignment:
Q  40 acccttctcgaaacccgctccgcaaaccaactcccctcatcgtcacccatcccatccctaatcttcactacttccttccaccaagatgaagtactccggc 139  Q
    |||||| |||| |||| ||| |||||||||| ||| ||   ||| || || ||||||||||||||| |||  ||| || ||||| | |||  ||||||||    
T  25350676 acccttttcgacaccctctctgcaaaccaacccccatccgtgtctcctattccatccctaatcttcgctatctccctcaaccaaaaagaatcactccggc 25350775  T
Q  140 ccc-tacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaaccatctctatctaccaaca 219  Q
    ||| |||| |||||||||| |||||||||||||| | ||| |||| |||||||||||| || ||||||||||| |||||||    
T  25350776 cccctaccaccaacctcccagcctcctcaccataccgcgccaccaacaccctataccagaacccatctctatccaccaaca 25350856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 91 - 219
Target Start/End: Complemental strand, 14686643 - 14686514
Alignment:
Q  91 ccatccctaatcttcactacttccttccaccaagatgaagtactccgg-cccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccc 189  Q
    ||||||||||||||| |||||||  ||||||||||||||  ||||||| ||||||||||||||| |||  ||  ||| ||||| | ||||||||| ||||    
T  14686643 ccatccctaatcttcgctacttctctccaccaagatgaaacactccggccccctacctccaaccgcccaaccgtctccccataccgcgctaccaggaccc 14686544  T
Q  190 tataccaaaaaccatctctatctaccaaca 219  Q
    |||||||||| ||  ||||||| |||||||    
T  14686543 tataccaaaatccgcctctatccaccaaca 14686514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 211
Target Start/End: Complemental strand, 7956299 - 7956185
Alignment:
Q  97 ctaatcttcactacttccttccaccaagatgaagtactccggcccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctatacca 196  Q
    ||||||||||| || | |||||||||  | |||  ||||||||| |  |||||||||||||  |||||||||||||||| || |||| ||| | ||||||    
T  7956299 ctaatcttcacaaccttcttccaccataaagaaccactccggcctcatcctccaacctcccgtcctcctcaccatatctagccaccaacactcgatacca 7956200  T
Q  197 aaaaccatctctatc 211  Q
    || ||||||||||||    
T  7956199 aagaccatctctatc 7956185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 201
Target Start/End: Original strand, 10362664 - 10362749
Alignment:
Q  117 ccaccaagatgaagtactccggcccct-acctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaac 201  Q
    ||||||||| |||  |||||||||||  ||||||||||||||  ||||||||||||||||||| ||||  ||||||||||| ||||    
T  10362664 ccaccaagaagaaccactccggccccccacctccaacctcccatcctcctcaccatatctcgccaccaaaaccctataccataaac 10362749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 216
Target Start/End: Original strand, 26514226 - 26514355
Alignment:
Q  88 atcccatccctaatcttcactacttccttccaccaagatgaagtactccggccccta-cctccaacctccctgcctcctcaccatatctcgctaccagca 186  Q
    |||||||||||||||||| |||  ||| ||||||||   |||  ||||||||||| | ||||||| |||||||||||||||||||| |  || |||| ||    
T  26514226 atcccatccctaatcttcgctatctccctccaccaaatagaaccactccggcccccaacctccaaactccctgcctcctcaccataccgagccaccaaca 26514325  T
Q  187 ccctataccaaaaaccatctctatctacca 216  Q
    | |||||||| || || |||||||| ||||    
T  26514326 ctctataccagaacccctctctatccacca 26514355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 10920041 - 10919970
Alignment:
Q  148 ccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaaccatctctatctaccaaca 219  Q
    |||||||||| |||||||||||||| || || |||| ||||||||||||||| ||  ||||||| |||||||    
T  10920041 ccaacctccccgcctcctcaccatacctagcaaccaacaccctataccaaaacccccctctatcaaccaaca 10919970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 201
Target Start/End: Complemental strand, 900438 - 900385
Alignment:
Q  148 ccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaac 201  Q
    |||||||||||||||||||||| || || ||  ||| |||||||||||||||||    
T  900438 ccaacctccctgcctcctcaccgtacctagcagccaacaccctataccaaaaac 900385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 13086044 - 13086173
Alignment:
Q  91 ccatccctaatcttcactacttccttccaccaagatgaagtactccgg-cccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccc 189  Q
    ||||| |||||| || |||| |||||||||||| | |||  ||||||| |||| ||||||||||||||| |  |||| ||||| |  || || || || |    
T  13086044 ccatctctaatcctccctacctccttccaccaaaaagaacaactccggcccccaacctccaacctccctccaacctcgccataacgggcgactagaacac 13086143  T
Q  190 tataccaaaaaccatctctatctaccaaca 219  Q
    ||||||| |||||  |||||||||||||||    
T  13086144 tataccacaaacctactctatctaccaaca 13086173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 29056045 - 29056130
Alignment:
Q  112 tccttccaccaagatgaagtactccggccccta-cctccaacctccctgcctcctcaccatatctcgctaccagcaccctatacca 196  Q
    ||||||||||| || |||  ||||||||||| | || ||||||||||  ||||||||||||| |  ||||||| ||||||||||||    
T  29056045 tccttccaccacgaagaaacactccggcccccaaccgccaacctcccatcctcctcaccataacgtgctaccaacaccctatacca 29056130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 1104533 - 1104469
Alignment:
Q  139 cccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaacca 203  Q
    |||| ||| |||||||| |||||||||||||||| |  || |||| |||||||||||| ||||||    
T  1104533 ccccaaccaccaacctcactgcctcctcaccataacgagcaaccatcaccctataccacaaacca 1104469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 34434823 - 34434871
Alignment:
Q  148 ccaacctccctgcctcctcaccatatctcgctaccagcaccctatacca 196  Q
    ||||||||||  ||||||||||||||||||| ||||  |||||||||||    
T  34434823 ccaacctcccatcctcctcaccatatctcgccaccaaaaccctatacca 34434871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 476628 - 476847
Alignment:
Q  1 cacctgtcataccaaaagtaagtagacacgccattacctacccttctcgaaacccgctccgcaaaccaactcccctcatcgtcacccatcccatccctaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  476628 cacctgtcataccaaaagtaagtagacacgccattacctacccttctcgaaacccgctccgcaaaccaactcccctcagcgtcacccatcccgtccctaa 476727  T
Q  101 tcttcactacttccttccaccaagatgaagtactccgg-cccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaa 199  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  476728 tcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaa 476827  T
Q  200 accatctctatctaccaaca 219  Q
    ||||||||||||||||||||    
T  476828 accatctctatctaccaaca 476847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 47 - 219
Target Start/End: Original strand, 380362 - 380535
Alignment:
Q  47 tcgaaacccgctccgcaaaccaactcccctcatcgtcacccatcccatccctaatcttcactacttccttccaccaagatgaagtactccggccccta-c 145  Q
    |||| |||| |||||||||||| | ||||||| | || || | ||| |||||||||||||||| ||||||| ||||||| |||  ||||||||||| | |    
T  380362 tcgacaccctctccgcaaaccagcccccctcaccttctcctaacccgtccctaatcttcactatttccttctaccaagaagaaccactccggcccccaac 380461  T
Q  146 ctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaaccatctctatctaccaaca 219  Q
    ||||||||||||||||||||||||||| | |||| |||||||||||||||| |||||||||||||| |||||||    
T  380462 ctccaacctccctgcctcctcaccataccgcgcttccagcaccctataccagaaaccatctctatccaccaaca 380535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 90 - 219
Target Start/End: Original strand, 42259784 - 42259914
Alignment:
Q  90 cccatccctaatcttcactacttccttccaccaagatgaagtactccggc-ccctacctccaacctccctgcctcctcaccatatctcgctaccagcacc 188  Q
    ||||||||||||||||||||| ||| |||||||||| |||| |||||||| ||| |||||||| ||||| ||| |||||| ||||||| | || | ||||    
T  42259784 cccatccctaatcttcactacctccctccaccaagaagaagcactccggctcccaacctccaaactcccagccacctcacgatatctctccacaaacacc 42259883  T
Q  189 ctataccaaaaaccatctctatctaccaaca 219  Q
     |||||||||| ||| ||||||| |||||||    
T  42259884 ttataccaaaacccacctctatccaccaaca 42259914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 90 - 175
Target Start/End: Complemental strand, 22176462 - 22176376
Alignment:
Q  90 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccta-cctccaacctccctgcctcctcaccatatct 175  Q
    |||||||||||||||| ||| ||||||||||||||| ||   ||||||||||| | || ||||||||||||||||||||||||||||    
T  22176462 cccatccctaatcttcgctatttccttccaccaagaagagacactccggcccccaaccgccaacctccctgcctcctcaccatatct 22176376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 90 - 209
Target Start/End: Complemental strand, 42039341 - 42039221
Alignment:
Q  90 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccta-cctccaacctccctgcctcctcaccatatctcgctaccagcacc 188  Q
    ||||||||||||||||| ||  ||| ||||||||||  ||| ||||||||||| | ||||||||| |||  || ||||||||||| |||| |||| ||||    
T  42039341 cccatccctaatcttcattaactccctccaccaagaaaaagcactccggcccccatcctccaaccgcccaaccacctcaccatatttcgccaccaacacc 42039242  T
Q  189 ctataccaaaaaccatctcta 209  Q
    ||||||||||| ||| |||||    
T  42039241 ctataccaaaacccacctcta 42039221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 4297897 - 4297833
Alignment:
Q  137 ggcccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaac 201  Q
    |||||| ||| ||||||||||  ||||||||||||| ||||| |||| |||||||||||| ||||    
T  4297897 ggccccaaccgccaacctcccatcctcctcaccatacctcgccaccaacaccctataccataaac 4297833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 15862263 - 15862194
Alignment:
Q  139 cccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaaccatctct 208  Q
    |||| |||||||||| ||| ||||| |||||||| || || | || ||||||||||||||| ||||||||    
T  15862263 ccccaacctccaaccgcccagcctcttcaccatacctagcaatcaacaccctataccaaaacccatctct 15862194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 41590650 - 41590707
Alignment:
Q  139 cccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctatacca 196  Q
    |||| ||| ||||||||||  ||||||||||||| ||||| |||| ||||||||||||    
T  41590650 ccccaaccgccaacctcccatcctcctcaccatacctcgccaccaacaccctatacca 41590707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 22437810 - 22437850
Alignment:
Q  179 taccagcaccctataccaaaaaccatctctatctaccaaca 219  Q
    ||||| |||||||||||| ||||||||||||||||| ||||    
T  22437810 taccaacaccctataccacaaaccatctctatctactaaca 22437850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 29572458 - 29572398
Alignment:
Q  139 cccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaa 199  Q
    |||| |||||||||||| |||||||||||||||| || ||  ||| |||||| ||||||||    
T  29572458 ccccaacctccaacctctctgcctcctcaccatacctagcagccaacaccctttaccaaaa 29572398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 29573835 - 29573775
Alignment:
Q  139 cccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaa 199  Q
    |||| |||||||||||| |||||||||||||||| || ||  ||| |||||| ||||||||    
T  29573835 ccccaacctccaacctctctgcctcctcaccatacctagcagccaacaccctttaccaaaa 29573775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 29575212 - 29575152
Alignment:
Q  139 cccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaa 199  Q
    |||| |||||||||||| |||||||||||||||| || ||  ||| |||||| ||||||||    
T  29575212 ccccaacctccaacctctctgcctcctcaccatacctagcagccaacaccctttaccaaaa 29575152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 29576589 - 29576529
Alignment:
Q  139 cccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaa 199  Q
    |||| |||||||||||| |||||||||||||||| || ||  ||| |||||| ||||||||    
T  29576589 ccccaacctccaacctctctgcctcctcaccatacctagcagccaacaccctttaccaaaa 29576529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 29577966 - 29577906
Alignment:
Q  139 cccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaa 199  Q
    |||| |||||||||||| |||||||||||||||| || ||  ||| |||||| ||||||||    
T  29577966 ccccaacctccaacctctctgcctcctcaccatacctagcagccaacaccctttaccaaaa 29577906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 29579343 - 29579283
Alignment:
Q  139 cccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaa 199  Q
    |||| |||||||||||| |||||||||||||||| || ||  ||| |||||| ||||||||    
T  29579343 ccccaacctccaacctctctgcctcctcaccatacctagcagccaacaccctttaccaaaa 29579283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 34334 - 34115
Alignment:
Q  1 cacctgtcataccaaaagtaagtagacacgccattacctacccttctcgaaacccgctccgcaaaccaactcccctcatcgtcacccatcccatccctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34334 cacctgtcataccaaaagtaagtagacacgccattacctattcttctcgaaacccgctccgcaaaccaactcccctcatcgtcacccatcccatccctaa 34235  T
Q  101 tcttcactacttccttccaccaagatgaagtactccgg-cccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaa 199  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34234 tcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgtctcctcaccatatctcgctaccagcaccctataccaaaa 34135  T
Q  200 accatctctatctaccaaca 219  Q
    ||||||||| ||||||||||    
T  34134 accatctctctctaccaaca 34115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 164; Significance: 8e-88; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 31675346 - 31675565
Alignment:
Q  1 cacctgtcataccaaaagtaagtagacacgccattacctacccttctcgaaacccgctccgcaaaccaactcccctcatcgtcacccatcccatccctaa 100  Q
    ||||| ||||||||||||||||||||| |||||||||||||| | ||||||||||||||| |||||||||||||||||||  |||||||||| |||||||    
T  31675346 cacctatcataccaaaagtaagtagacgcgccattacctaccttcctcgaaacccgctcctcaaaccaactcccctcatctacacccatcccgtccctaa 31675445  T
Q  101 tcttcactacttccttccaccaagatgaagtactccgg-cccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaa 199  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  31675446 tcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcaccaccagcaccctataccaaaa 31675545  T
Q  200 accatctctatctaccaaca 219  Q
    |||| ||||||| |||||||    
T  31675546 accacctctatccaccaaca 31675565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 31921076 - 31920857
Alignment:
Q  1 cacctgtcataccaaaagtaagtagacacgccattacctacccttctcgaaacccgctccgcaaaccaactcccctcatcgtcacccatcccatccctaa 100  Q
    ||||| ||||||||||||||||||||| |||||||||||||| | |||||||||| |||| |||||||||||||||||||  |||||||||| |||||||    
T  31921076 cacctatcataccaaaagtaagtagacgcgccattacctaccttcctcgaaacccactcctcaaaccaactcccctcatctacacccatcccgtccctaa 31920977  T
Q  101 tcttcactacttccttccaccaagatgaagtactccgg-cccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaa 199  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  31920976 tcttcactacttccttctaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcaccaccagcaccctataccaaaa 31920877  T
Q  200 accatctctatctaccaaca 219  Q
    |||| ||||||| |||||||    
T  31920876 accacctctatccaccaaca 31920857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 19875748 - 19875877
Alignment:
Q  91 ccatccctaatcttcactacttccttccaccaagatgaagtactccggccccta-cctccaacctccctgcctcctcaccatatctcgctaccagcaccc 189  Q
    |||||| |||||||| |||| |||||||||||||||||   ||||||||||| | |||||||||||| ||||||||||||||||||||| |||| |||||    
T  19875748 ccatccttaatcttcgctacctccttccaccaagatgatacactccggcccccaacctccaacctccttgcctcctcaccatatctcgccaccaacaccc 19875847  T
Q  190 tataccaaaaaccatctctatctaccaaca 219  Q
    |||||||||| ||| ||||||||| |||||    
T  19875848 tataccaaaacccacctctatctatcaaca 19875877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 25024430 - 25024358
Alignment:
Q  139 cccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaaccatctctatc 211  Q
    |||| ||| |||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||    
T  25024430 ccccaaccgccaacctccctgcctcctcaccatatctagcttccaacaccctataccaaaaaccatctctatc 25024358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 117 - 201
Target Start/End: Complemental strand, 52250733 - 52250648
Alignment:
Q  117 ccaccaagatgaagtactccggccccta-cctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaac 201  Q
    ||||||||| |||  ||||||||||| | |||||||||||||  ||||||||||||||||||| |||| |||||||||||| ||||    
T  52250733 ccaccaagaagaaccactccggcccccaacctccaacctcccatcctcctcaccatatctcgccaccaacaccctataccataaac 52250648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 53941808 - 53941937
Alignment:
Q  91 ccatccctaatcttcactacttccttccaccaagatgaagtactccggcccc-tacctccaacctccctgcctcctcaccatatctcgctaccagcaccc 189  Q
    ||||||||||||||| |||  ||| ||||| || | |||  ||||||||||| |||| |||||||||| |||||||||||||| | ||| |||| ||||     
T  53941808 ccatccctaatcttcgctatctccctccactaaaaagaatcactccggccccctaccaccaacctcccagcctcctcaccataccgcgccaccaacacct 53941907  T
Q  190 tataccaaaaaccatctctatctaccaaca 219  Q
    ||||||| || || |||||||| |||||||    
T  53941908 tataccagaacccctctctatccaccaaca 53941937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 91 - 211
Target Start/End: Original strand, 55367115 - 55367236
Alignment:
Q  91 ccatccctaatcttcactacttccttccaccaagatgaagtactccggcccc-tacctccaacctccctgcctcctcaccatatctcgctaccagcaccc 189  Q
    ||||| |||||||||  ||  ||| |||||||| | |||  ||||||||||| ||||||||||||| |||||||||||||||||||||||| ||  |||     
T  55367115 ccatctctaatcttcgttatctccatccaccaaaaggaatcactccggccccctacctccaacctctctgcctcctcaccatatctcgctaacaaaacct 55367214  T
Q  190 tataccaaaaaccatctctatc 211  Q
    ||||||| || ||| |||||||    
T  55367215 tataccacaacccacctctatc 55367236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 91 - 178
Target Start/End: Original strand, 14307713 - 14307801
Alignment:
Q  91 ccatccctaatcttcactacttccttccaccaagatgaagtactccggcccctac-ctccaacctccctgcctcctcaccatatctcgc 178  Q
    ||||||||||||||| |||  ||| ||||||||| |||   ||||||||||| |  |||||| ||||||||||||||||||||||||||    
T  14307713 ccatccctaatcttcgctatctccctccaccaaggtgacacactccggcccccaaactccaatctccctgcctcctcaccatatctcgc 14307801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 219
Target Start/End: Original strand, 48930280 - 48930360
Alignment:
Q  139 cccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaaccatctctatctaccaaca 219  Q
    |||| ||||||||||||||  ||||||||||||||||||| ||||  ||||||||||| |||| ||  || ||||||||||    
T  48930280 ccccaacctccaacctcccatcctcctcaccatatctcgccaccaaaaccctataccataaactattcctctctaccaaca 48930360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 219
Target Start/End: Complemental strand, 40513360 - 40513230
Alignment:
Q  90 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccta-cctccaacctccctgcctcctcaccatatctcgctaccagcacc 188  Q
    |||||||||||||||  ||| ||||  |||||| | ||||  ||||| ||||| | ||||||||| ||| |||  ||||||||| |  |||||||| |||    
T  40513360 cccatccctaatctttgctaattcccgccaccacggtgaaacactcctgcccccaacctccaaccgcccagccgtctcaccataccgagctaccaggacc 40513261  T
Q  189 ctataccaaaaaccatctctatctaccaaca 219  Q
    |||||||| |||||| ||||||| |||||||    
T  40513260 ctataccataaaccacctctatccaccaaca 40513230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 18381564 - 18381692
Alignment:
Q  91 ccatccctaatcttcactacttccttccaccaagatgaagtactccggcccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccct 190  Q
    |||||||||||| || |||  ||| ||||||||   |||  |||||| ||||||| |||||||| ||  |||| |||||||||||||| ||||  ||||     
T  18381564 ccatccctaatcctcgctatctccctccaccaaatagaaacactccgccccctacatccaaccttccatcctcgtcaccatatctcgccaccaaaaccca 18381663  T
Q  191 ataccaaaaaccatctctatctaccaaca 219  Q
    |||||| || ||  ||||||| |||||||    
T  18381664 ataccataaccctcctctatcaaccaaca 18381692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 193
Target Start/End: Original strand, 31547897 - 31547980
Alignment:
Q  112 tccttccaccaagatgaagtactccggcccct--acctccaacctccctgcctcctcaccatatctcgctaccagcaccctata 193  Q
    ||||||||||| || |||  |||||||||||   ||| ||||||||||  ||||||||||||| | |||||||| |||||||||    
T  31547897 tccttccaccacgaagaaacactccggccccccaaccaccaacctcccatcctcctcaccataacgcgctaccaacaccctata 31547980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 91 - 219
Target Start/End: Complemental strand, 27218757 - 27218628
Alignment:
Q  91 ccatccctaatcttcactacttccttccaccaagatgaagtactccggccccta-cctccaacctccctgcctcctcaccatatctcgctaccagcaccc 189  Q
    ||||||||||||||| |||| |||||||||||||||||   ||||||||||| | || ||||||||||||||||||||||||||||||| |||| |||||    
T  27218757 ccatccctaatcttcgctacctccttccaccaagatgatacactccggcccccaaccgccaacctccctgcctcctcaccatatctcgccaccaacaccc 27218658  T
Q  190 tataccaaaaaccatctctatctaccaaca 219  Q
    |||||||||| ||| ||||||||| |||||    
T  27218657 tataccaaaatccacctctatctatcaaca 27218628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 47 - 219
Target Start/End: Original strand, 20349425 - 20349597
Alignment:
Q  47 tcgaaacccgctccgcaaaccaactcccctcatcgtcacccatcccatccctaatcttcactacttccttccaccaagatgaagtactccggcccctacc 146  Q
    |||| |||| ||| |||||||||| | |||||   || || |||||||||||||||||| |||  ||| ||||||||   |||  ||||| |||||||||    
T  20349425 tcgacaccctctctgcaaaccaaccctcctcagaatcgcctatcccatccctaatcttcgctatctccctccaccaaagagaaccactcctgcccctacc 20349524  T
Q  147 tccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaaccatctctatctaccaaca 219  Q
    |||||||||||||||||||||||||| |  || |||| |||||||||||| || |  ||||||||||||||||    
T  20349525 tccaacctccctgcctcctcaccataccgagccaccaacaccctataccataacctttctctatctaccaaca 20349597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 94 - 219
Target Start/End: Complemental strand, 19545034 - 19544908
Alignment:
Q  94 tccctaatcttcactacttccttccaccaagatgaagtactccggccccta-cctccaacctccctgcctcctcaccatatctcgctaccagcaccctat 192  Q
    ||||||||||||||||  |||||||||||  | |||  ||||||||||| | ||||||||||| ||||||||||||||||||  |   ||| ||||||||    
T  19545034 tccctaatcttcactagatccttccaccacaaagaaccactccggcccccaacctccaacctctctgcctcctcaccatatcgtgtcgccaacaccctat 19544935  T
Q  193 accaaaaaccatctctatctaccaaca 219  Q
    ||||||| ||||||||||| |||||||    
T  19544934 accaaaacccatctctatccaccaaca 19544908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 211
Target Start/End: Complemental strand, 17504195 - 17504073
Alignment:
Q  90 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccta-cctccaacctccctgcctcctcaccatatctcgctaccagcacc 188  Q
    |||||| ||||||||||  || |||||||||||  | |||  ||||||||||| | |||||||||||||  |||||||||| |||||||| |||| |||     
T  17504195 cccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccgtatctcgccaccaacact 17504096  T
Q  189 ctataccaaaaaccatctctatc 211  Q
    | |||||||| ||||||||||||    
T  17504095 cgataccaaagaccatctctatc 17504073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 211
Target Start/End: Original strand, 17549019 - 17549141
Alignment:
Q  90 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccta-cctccaacctccctgcctcctcaccatatctcgctaccagcacc 188  Q
    |||||| ||||||||||  || |||||||||||  | |||  ||||||||||| | |||||||||||||  |||||||||| |||||||| |||| |||     
T  17549019 cccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccgtatctcgccaccaacact 17549118  T
Q  189 ctataccaaaaaccatctctatc 211  Q
    | |||||||| ||||||||||||    
T  17549119 cgataccaaagaccatctctatc 17549141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 199
Target Start/End: Original strand, 34103985 - 34104091
Alignment:
Q  94 tccctaatcttcactacttccttccaccaagatgaagtactccggccccta-cctccaacctccctgcctcctcaccatatctcgctaccagcaccctat 192  Q
    ||||||||||||||||  |||||||||||| | |||  ||||| ||||| | |||||||||||| |||||||||||| || | ||| |||| ||||||||    
T  34103985 tccctaatcttcactaaatccttccaccaacaagaaccactccagcccccatcctccaacctccttgcctcctcaccgtaacgcgccaccaacaccctat 34104084  T
Q  193 accaaaa 199  Q
    |||||||    
T  34104085 accaaaa 34104091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 8752973 - 8752925
Alignment:
Q  148 ccaacctccctgcctcctcaccatatctcgctaccagcaccctatacca 196  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||    
T  8752973 ccaacctcccagcctcctcaccatatctcgccaccagcaccctatacca 8752925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 25018904 - 25018847
Alignment:
Q  139 cccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctatacca 196  Q
    |||| |||||||||||||| ||||||||||||||||| || |||| ||||||||||||    
T  25018904 ccccaacctccaacctcccagcctcctcaccatatcttgccaccaacaccctatacca 25018847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 199
Target Start/End: Original strand, 11341350 - 11341410
Alignment:
Q  139 cccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaa 199  Q
    |||| ||||||||||||||||||||||||||||| || ||  ||| |||||||||||||||    
T  11341350 ccccgacctccaacctccctgcctcctcaccatacctagcagccaacaccctataccaaaa 11341410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 201
Target Start/End: Complemental strand, 41805323 - 41805282
Alignment:
Q  160 cctcctcaccatatctcgctaccagcaccctataccaaaaac 201  Q
    ||||||||||||||||||| |||| |||||||||||||||||    
T  41805323 cctcctcaccatatctcgccaccaacaccctataccaaaaac 41805282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 199
Target Start/End: Complemental strand, 23054548 - 23054497
Alignment:
Q  148 ccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaa 199  Q
    |||||||||||||||||||||||| ||| ||  ||| |||||||||||||||    
T  23054548 ccaacctccctgcctcctcaccatgtctagccgccaacaccctataccaaaa 23054497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 219
Target Start/End: Original strand, 20918524 - 20918594
Alignment:
Q  149 caacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaaccatctctatctaccaaca 219  Q
    |||||||||||||| ||||||||| |  | ||| |||||||||||||| |||||  |||||||||| ||||    
T  20918524 caacctccctgccttctcaccataacgagttactagcaccctataccacaaacctcctctatctactaaca 20918594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 17056055 - 17056140
Alignment:
Q  112 tccttccaccaagatgaagtactccggccccta-cctccaacctccctgcctcctcaccatatctcgctaccagcaccctatacca 196  Q
    ||||||||||| || |||  ||||||||||| | || ||||||||||  ||||||||||||| | ||| |||| ||||||||||||    
T  17056055 tccttccaccacgaagaaacactccggcccccaaccaccaacctcccatcctcctcaccataacgcgccaccaacaccctatacca 17056140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 39658972 - 39658919
Alignment:
Q  141 cctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctatac 194  Q
    |||||| |||||||||| |||||||||||||| | ||| |||| ||||||||||    
T  39658972 cctacccccaacctcccagcctcctcaccataccgcgccaccaacaccctatac 39658919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 12308699 - 12308647
Alignment:
Q  148 ccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaa 200  Q
    ||||||||| ||||||||||||||| || ||  ||| ||||||||||||||||    
T  12308699 ccaacctccatgcctcctcaccataccttgcagccaacaccctataccaaaaa 12308647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 169
Target Start/End: Original strand, 23887588 - 23887667
Alignment:
Q  90 cccatccctaatcttcactacttccttccaccaagatgaagtactccg-gcccctacctccaacctccctgcctcctcacc 169  Q
    |||||||||||||||| |||  ||| |||||||||| |||  ||||||  |||| ||||||||||| ||||||||||||||    
T  23887588 cccatccctaatcttcgctatctccctccaccaagaagaaacactccgacccccaacctccaacct-cctgcctcctcacc 23887667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 169
Target Start/End: Original strand, 23898764 - 23898843
Alignment:
Q  90 cccatccctaatcttcactacttccttccaccaagatgaagtactccg-gcccctacctccaacctccctgcctcctcacc 169  Q
    |||||||||||||||| |||  ||| |||||||||| |||  ||||||  |||| ||||||||||| ||||||||||||||    
T  23898764 cccatccctaatcttcgctatctccctccaccaagaagaaacactccgacccccaacctccaacct-cctgcctcctcacc 23898843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 2071955 - 2072151
Alignment:
Q  1 cacctgtcataccaaaagtaagtagacacgccattacctacccttctcgaaacccgctccgcaaaccaactcccctcatcgtcacccatcccatccctaa 100  Q
    ||||||||| ||||||||||||||   |  ||||  |||||| ||||||| |||| ||| |||||||| | ||||||  | ||||| | ||| |||||||    
T  2071955 cacctgtcagaccaaaagtaagtatgtaaaccatcccctacctttctcgacaccctctctgcaaaccagcccccctcggcctcacctaccccgtccctaa 2072054  T
Q  101 tcttcactacttccttccaccaagatgaagtactccggccccta-cctccaacctccctgcctcctcaccatatctcgctaccagcaccctatacca 196  Q
    |||||||||  ||| |||||||  | |||  |||||| |||| | |||| ||||||| ||||||||||||||||||||| |||||||||||||||||    
T  2072055 tcttcactaactccctccaccagcaagaaacactccgtcccccaacctctaacctccttgcctcctcaccatatctcgccaccagcaccctatacca 2072151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 9690927 - 9691056
Alignment:
Q  91 ccatccctaatcttcactacttccttccaccaagatgaagtactccggccccta-cctccaacctccctgcctcctcaccatatctcgctaccagcaccc 189  Q
    ||||||||||||||| |||  ||| ||||||||   |||  ||||||||||| | ||||||||||||| ||||||||||||||||| ||||| |||||||    
T  9690927 ccatccctaatcttcgctatctccctccaccaatgagaaacactccggcccccaacctccaacctcccagcctcctcaccatatctagctactagcaccc 9691026  T
Q  190 tataccaaaaaccatctctatctaccaaca 219  Q
    |||||||||| |||  |||||| |||||||    
T  9691027 tataccaaaacccacatctatccaccaaca 9691056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 94 - 183
Target Start/End: Complemental strand, 52617497 - 52617407
Alignment:
Q  94 tccctaatcttcactacttccttccaccaagatgaagtactccggccccta-cctccaacctccctgcctcctcaccatatctcgctacca 183  Q
    |||||||||||| |||  ||| ||||||||||||||  ||||||||| ||| ||||||||||| |||||||||||||||||||||| ||||    
T  52617497 tccctaatcttcgctatctccctccaccaagatgaaacactccggcctctaacctccaacctctctgcctcctcaccatatctcgccacca 52617407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 211
Target Start/End: Complemental strand, 43516469 - 43516262
Alignment:
Q  5 tgtcataccaaaagtaagtagacacgccattacctacccttctcgaaacccgctccgcaaaccaactcccctcatcgtcacccatcccatccctaatctt 104  Q
    ||||||||||||||||||||     |||||  |||||  || |||| |||| ||| |||||||| | ||||||  | || || | |||||||||||||||    
T  43516469 tgtcataccaaaagtaagtactagagccatctcctacttttttcgacaccctctctgcaaaccagcccccctctacatcgcctaccccatccctaatctt 43516370  T
Q  105 cactacttccttccaccaagatgaagtactcc-ggcccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaacca 203  Q
    | ||||||||  |||||||||||||  ||||| | |||| |||||||||| ||| |||  ||||||||| | | |||| || ||||||||||| ||||||    
T  43516369 cgctacttcccgccaccaagatgaaacactcctgcccccaacctccaaccgcccagccgtctcaccataccgcactactaggaccctataccataaacca 43516270  T
Q  204 tctctatc 211  Q
     |||||||    
T  43516269 cctctatc 43516262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 207
Target Start/End: Original strand, 7098986 - 7099104
Alignment:
Q  90 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccta-cctccaacctccctgcctcctcaccatatctcgctaccagcacc 188  Q
    |||||||||||||||||| || ||||||||||||   |||  ||||||||||| | ||||||||||| |  |||||||||||||||| |||| ||  |||    
T  7098986 cccatccctaatcttcacaacctccttccaccaaatagaaccactccggcccccatcctccaacctctcatcctcctcaccatatctagctatcaaaacc 7099085  T
Q  189 ctataccaaaaaccatctc 207  Q
    | |||||| ||||| ||||    
T  7099086 cgataccacaaaccctctc 7099104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 38296260 - 38296322
Alignment:
Q  139 cccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaac 201  Q
    |||| ||||||||||||||   | |||||||||||||||| |||| |||||||||||||||||    
T  38296260 ccccaacctccaacctcccattcacctcaccatatctcgccaccaacaccctataccaaaaac 38296322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 219
Target Start/End: Complemental strand, 56337132 - 56337006
Alignment:
Q  94 tccctaatcttcactacttccttccaccaagatgaagtactccggccccta-cctccaacctccctgcctcctcaccatatctcgctaccagcaccctat 192  Q
    |||||||||||| |||  ||| |||||||||  |||  |||||| |||| | ||||||||| ||| |||||||||||||| |||||  | || |||||||    
T  56337132 tccctaatcttcgctatctccctccaccaagtagaaacactccgacccccaacctccaaccgcccagcctcctcaccatacctcgccgctagtaccctat 56337033  T
Q  193 accaaaaaccatctctatctaccaaca 219  Q
    |||| |||||  ||||||| |||||||    
T  56337032 accacaaacctactctatccaccaaca 56337006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 196
Target Start/End: Original strand, 36183045 - 36183148
Alignment:
Q  94 tccctaatcttcactacttccttccaccaagatgaagtactccggccccta-cctccaacctccctgcctcctcaccatatctcgctaccagcaccctat 192  Q
    |||||||||||| |||  ||| |||||||||  |||  ||||||||||| | ||||||||| |||  |||||||||||||||| || || || |||||||    
T  36183045 tccctaatcttcgctatctccctccaccaagtagaaacactccggcccccaacctccaaccgcccatcctcctcaccatatcttgccacaagtaccctat 36183144  T
Q  193 acca 196  Q
    ||||    
T  36183145 acca 36183148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 219
Target Start/End: Complemental strand, 55725374 - 55725212
Alignment:
Q  58 tccgcaaaccaactcccctcatcgtcacccatcccatccctaatcttcactacttccttccaccaagatgaagtactccggccccta-cctccaacctcc 156  Q
    ||||||||||||| | || || | || || |||||||| || ||| | ||||  ||| |||||||||| |||  ||||||||||| | ||||||| |  |    
T  55725374 tccgcaaaccaaccctccccaccctcgcctatcccatctctgatcatgactatctccctccaccaagaagaacaactccggcccccatcctccaaaccac 55725275  T
Q  157 ctgcctcctcaccatatctcgctaccagcaccctataccaaaaaccatctctatctaccaaca 219  Q
    |  ||||| ||||||| || || |||| |||||||||||| || |||||||||||||| ||||    
T  55725274 catcctccacaccatacctagccaccaacaccctataccataatccatctctatctactaaca 55725212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 29328358 - 29328301
Alignment:
Q  144 acctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaac 201  Q
    ||||||||||||||  ||||||||||||| ||||| ||||  ||| ||||||||||||    
T  29328358 acctccaacctccccacctcctcaccatacctcgcgaccaagaccttataccaaaaac 29328301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 6593 - 6722
Alignment:
Q  91 ccatccctaatcttcactacttccttccaccaagatgaagtactccggccccta-cctccaacctccctgcctcctcaccatatctcgctaccagcaccc 189  Q
    ||||||||||||||| |||| ||  ||||||| ||||||| ||||| ||||| | |||||||||||||||||||||||||||||||||| || |  ||||    
T  6593 ccatccctaatcttcgctacctctctccaccatgatgaagcactccagcccccaacctccaacctccctgcctcctcaccatatctcgccactaaaaccc 6692  T
Q  190 tataccaaaaaccatctctatctaccaaca 219  Q
    ||||||| |||||  |||  ||||||||||    
T  6693 tataccacaaaccgcctcgctctaccaaca 6722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 6823916 - 6824045
Alignment:
Q  91 ccatccctaatcttcactacttccttccaccaagatgaagtactccggccccta-cctccaacctccctgcctcctcaccatatctcgctaccagcaccc 189  Q
    ||||||||||||||| |||| ||||||||||| | ||||  ||||||||||| | ||||||||||||||||||||||| ||||||||||  |||  ||||    
T  6823916 ccatccctaatcttcgctacctccttccaccacggtgaaacactccggcccccaacctccaacctccctgcctcctcaacatatctcgccgccaaaaccc 6824015  T
Q  190 tataccaaaaaccatctctatctaccaaca 219  Q
    ||||||| || ||  ||||||| |||||||    
T  6824016 tataccagaaccccgctctatccaccaaca 6824045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 118 - 201
Target Start/End: Original strand, 10689087 - 10689170
Alignment:
Q  118 caccaagatgaagtactccggcccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaac 201  Q
    |||||||| |||  ||||||||||| |||||||||||||  ||||| |||||||||||| | |||| |||||||||||| ||||    
T  10689087 caccaagaagaaccactccggccccaacctccaacctcctagcctcatcaccatatctcaccaccaacaccctataccataaac 10689170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 201
Target Start/End: Original strand, 43310790 - 43310875
Alignment:
Q  117 ccaccaagatgaagtactccggccccta-cctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaac 201  Q
    ||||||||| |||  ||||||||||| | |||||||||||||  ||||||| ||||||||||| |||| |||||||||||| ||||    
T  43310790 ccaccaagaagaaccactccggcccccaacctccaacctcccatcctcctcgccatatctcgccaccaacaccctataccacaaac 43310875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 196
Target Start/End: Original strand, 11196855 - 11196962
Alignment:
Q  90 cccatccctaatcttcactacttccttccaccaagatgaagtactccgg-cccctacctccaacctccctgcctcctcaccatatctcgctaccagcacc 188  Q
    |||||||||||||||  ||||||||  |||||||||||||  ||||||| |||| |||||||||| |||  |   ||||||||| | ||||||||| |||    
T  11196855 cccatccctaatcttagctacttcccgccaccaagatgaaacactccggcccccaacctccaaccgcccaactgtctcaccataccgcgctaccagaacc 11196954  T
Q  189 ctatacca 196  Q
    ||||||||    
T  11196955 ctatacca 11196962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 26146769 - 26146831
Alignment:
Q  139 cccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaac 201  Q
    |||| ||||||||||||||  ||||||| ||||||||||| |||| |||||||||||| ||||    
T  26146769 ccccaacctccaacctcccatcctcctcgccatatctcgccaccaacaccctataccacaaac 26146831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 219
Target Start/End: Original strand, 7301227 - 7301307
Alignment:
Q  139 cccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaaccatctctatctaccaaca 219  Q
    |||| |||||||||||| ||| ||||| ||| || ||| | |||| |||||||||| |||| ||| ||||||| |||||||    
T  7301227 ccccaacctccaacctctctgtctccttaccgtacctcaccaccaacaccctatactaaaacccacctctatccaccaaca 7301307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 88 - 219
Target Start/End: Original strand, 25193590 - 25193722
Alignment:
Q  88 atcccatccctaatcttcactacttccttccaccaagatgaagtactccggcccc-tacctccaacctccctgcctcctcaccatatctcgctaccagca 186  Q
    |||||||||||||||||| |||  ||| |||||||| | |||  ||||||||||| ||||||||||||||| |||||||||||||| | | | |||| ||    
T  25193590 atcccatccctaatcttcgctatctccctccaccaataagaatcactccggccccctacctccaacctcccagcctcctcaccataccgcaccaccaaca 25193689  T
Q  187 ccctataccaaaaaccatctctatctaccaaca 219  Q
    ||| |||||| || ||||||||||| |||||||    
T  25193690 cccgataccagaacccatctctatccaccaaca 25193722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 94 - 219
Target Start/End: Original strand, 15439632 - 15439751
Alignment:
Q  94 tccctaatcttcactacttccttccaccaagatgaagtactccggcccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctata 193  Q
    |||||||||||||||||||||||||||||| | |||   ||||||||||      ||||||||||||||||||||||||   |||  ||| |||||||||    
T  15439632 tccctaatcttcactacttccttccaccaaaaagaaccgctccggcccc------caacctccctgcctcctcaccatactgcgcccccaacaccctata 15439725  T
Q  194 ccaaaaaccatctctatctaccaaca 219  Q
    ||| |||||||||||||  |||||||    
T  15439726 ccataaaccatctctattcaccaaca 15439751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 94 - 219
Target Start/End: Original strand, 15530936 - 15531055
Alignment:
Q  94 tccctaatcttcactacttccttccaccaagatgaagtactccggcccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctata 193  Q
    |||||||||||||||||||||||||||||| | |||   ||||||||||      ||||||||||||||||||||||||   |||  ||| |||||||||    
T  15530936 tccctaatcttcactacttccttccaccaaaaagaaccgctccggcccc------caacctccctgcctcctcaccatactgcgcccccaacaccctata 15531029  T
Q  194 ccaaaaaccatctctatctaccaaca 219  Q
    ||| |||||||||||||  |||||||    
T  15531030 ccataaaccatctctattcaccaaca 15531055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 83 - 196
Target Start/End: Complemental strand, 29721553 - 29721439
Alignment:
Q  83 cacccatcccatccctaatcttcactacttccttccaccaagatgaagtactccggcccc-tacctccaacctccctgcctcctcaccatatctcgctac 181  Q
    |||| |||||||||||||||||| |||  ||| |||||||| | ||   ||||||||||| ||||||||||||||| | |||||||||||||||||| ||    
T  29721553 caccaatcccatccctaatcttcgctatctccctccaccaataagagacactccggccccctacctccaacctcccaggctcctcaccatatctcgccac 29721454  T
Q  182 cagcaccctatacca 196  Q
    ||  |||||||||||    
T  29721453 caaaaccctatacca 29721439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 219
Target Start/End: Original strand, 6245593 - 6245716
Alignment:
Q  90 cccatccctaatcttcactacttccttccaccaagatgaagtactccggcccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccc 189  Q
    |||||||||||||||||||||||||  |||||||||||||  ||||||||||      |||||||||| |||| ||||||||| |  ||||| || ||||    
T  6245593 cccatccctaatcttcactacttcccgccaccaagatgaaacactccggccc------ccaacctcccagccttctcaccataacatgctacaagaaccc 6245686  T
Q  190 tataccaaaaaccatctctatctaccaaca 219  Q
    ||||||| |  ||| ||||||| |||||||    
T  6245687 tataccagagcccacctctatccaccaaca 6245716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 196
Target Start/End: Complemental strand, 37165753 - 37165650
Alignment:
Q  94 tccctaatcttcactacttccttccaccaagatgaagtactccggccccta-cctccaacctccctgcctcctcaccatatctcgctaccagcaccctat 192  Q
    |||||||||||| |||  ||| |||||||||  |||  ||||||||||| | ||||||||| |||  ||||||| ||||||||||| ||||| |||||||    
T  37165753 tccctaatcttcgctatctccctccaccaagtagaaacactccggcccccaacctccaaccgcccatcctcctcgccatatctcgccaccagtaccctat 37165654  T
Q  193 acca 196  Q
    ||||    
T  37165653 acca 37165650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 12332411 - 12332461
Alignment:
Q  148 ccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaa 198  Q
    ||||||||||  ||||||||||||||||||| |||| ||||||||||||||    
T  12332411 ccaacctcccatcctcctcaccatatctcgccaccaacaccctataccaaa 12332461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 36025026 - 36025155
Alignment:
Q  91 ccatccctaatcttcactacttccttccaccaagatgaagtactccgg-cccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccc 189  Q
    ||||||||||||||| |||  ||  ||||| |||  |||  ||||||| |||| |||||||||| ||| |||||||||||||||||||| ||||  || |    
T  36025026 ccatccctaatcttcgctaactctctccacaaagtggaaacactccggtccccaacctccaaccgcccagcctcctcaccatatctcgccaccaaaactc 36025125  T
Q  190 tataccaaaaaccatctctatctaccaaca 219  Q
    ||||||| || ||  ||||||| |||||||    
T  36025126 tataccataaccctcctctatccaccaaca 36025155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 18187709 - 18187780
Alignment:
Q  148 ccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaaccatctctatctaccaaca 219  Q
    |||||| |||| |||||||||||||||   | |||||| |||||||||| |||||| |||||||||| ||||    
T  18187709 ccaaccgccctacctcctcaccatatcaatcaaccagctccctataccacaaaccacctctatctactaaca 18187780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 196
Target Start/End: Original strand, 12341072 - 12341178
Alignment:
Q  91 ccatccctaatcttcactacttccttccaccaagatgaagtactccggc-ccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccc 189  Q
    ||||||||||||||| |||  | | ||||||||   |||  |||||||| ||| |||||||||| ||| |||||||||||||| ||||| ||||| ||||    
T  12341072 ccatccctaatcttcgctatctacctccaccaattagaaacactccggctcccaacctccaaccgcccagcctcctcaccatacctcgccaccagtaccc 12341171  T
Q  190 tatacca 196  Q
    || ||||    
T  12341172 taaacca 12341178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 36492935 - 36492997
Alignment:
Q  139 cccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaac 201  Q
    |||| ||| ||||||||||  ||||||||||||| ||||| |||| |||||||||||| ||||    
T  36492935 ccccaaccgccaacctcccatcctcctcaccatacctcgccaccaacaccctataccataaac 36492997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 63876 - 63824
Alignment:
Q  148 ccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaa 200  Q
    |||||||||||||||||||| |||||||||| |||| ||| ||||||||||||    
T  63876 ccaacctccctgcctcctcatcatatctcgccaccaacactctataccaaaaa 63824  T

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Target: scaffold0026 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 199
Target Start/End: Original strand, 67634 - 67694
Alignment:
Q  139 cccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaa 199  Q
    |||| ||||||||||||||||||||||||||||| || |  | || |||||||||||||||    
T  67634 ccccaacctccaacctccctgcctcctcaccatacctagaaatcaacaccctataccaaaa 67694  T

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Target: scaffold0061 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 55216 - 55278
Alignment:
Q  139 cccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaac 201  Q
    |||| |||||||||||| |  ||||||| ||||||||||| |||| |||||||||||| ||||    
T  55216 ccccaacctccaacctctcatcctcctcgccatatctcgccaccaacaccctataccataaac 55278  T

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Target: scaffold0017 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 143418 - 143356
Alignment:
Q  139 cccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaac 201  Q
    |||| |||||||||||| |  ||||||| ||||||||||| |||| |||||||||||| ||||    
T  143418 ccccaacctccaacctctcatcctcctcgccatatctcgccaccaacaccctataccataaac 143356  T

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