View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8926_high_3 (Length: 539)

Name: NF8926_high_3
Description: NF8926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8926_high_3
NF8926_high_3
[»] chr3 (2 HSPs)
chr3 (43-364)||(2562784-2563105)
chr3 (366-536)||(2563141-2563297)
[»] chr2 (3 HSPs)
chr2 (228-372)||(38576820-38576964)
chr2 (228-360)||(16576296-16576428)
chr2 (381-437)||(16863485-16863542)
[»] chr7 (3 HSPs)
chr7 (387-499)||(42012836-42012948)
chr7 (266-353)||(22593643-22593730)
chr7 (381-426)||(34891562-34891608)
[»] scaffold0136 (1 HSPs)
scaffold0136 (228-288)||(36940-37000)
[»] chr4 (3 HSPs)
chr4 (348-453)||(15131548-15131651)
chr4 (228-308)||(22050900-22050981)
chr4 (381-464)||(46431112-46431196)
[»] chr6 (2 HSPs)
chr6 (387-479)||(20068120-20068213)
chr6 (228-308)||(7556061-7556143)
[»] chr8 (1 HSPs)
chr8 (237-337)||(29969154-29969257)
[»] chr5 (3 HSPs)
chr5 (228-294)||(40483729-40483795)
chr5 (228-285)||(972932-972989)
chr5 (381-437)||(17736743-17736800)
[»] chr1 (3 HSPs)
chr1 (228-294)||(7104313-7104379)
chr1 (387-426)||(10775052-10775092)
chr1 (408-464)||(15321098-15321154)


Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 43 - 364
Target Start/End: Original strand, 2562784 - 2563105
Alignment:
Q  43 tctcccttcaagacacttgatagcacgactcttcctaaaatggtgtgacgactcataaatttcatctaatataaaaaagaagattgaaggttatttctgc 142  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||| |||    
T  2562784 tctcccttcaagacacttgatagcacgacttttcctaaaatggtgtgacgactcataaatttcattcaatataaaaaagaatattgaaggttatttatgc 2562883  T
Q  143 actaccccttgatgaattgagggtaatttacctcctatnnnnnnntctctatttcttcatctttattcttataaccattaccattttcatctctttcatt 242  Q
    |||||||||||||||||||||||||||||||| |||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2562884 actaccccttgatgaattgagggtaatttaccccctataaaaaaatctctatttcttcatctttattcttataaccattaccattttcatctctttcatt 2562983  T
Q  243 caacatgtgatcctcgtatcatttgtttcataatcgaatcatacttgtcatttgggtaaattacccatattcatcacggggtaatgtaggtctcattgat 342  Q
    ||||||||||||    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2562984 caacatgtgatctctatatcatttgtttcagaatcgaatcatacttatcatttgggtaaattacccatattcatcaaggggtaatgtaggtctcattgat 2563083  T
Q  343 agagattttttcttacaagcag 364  Q
    ||||||||||||||||||||||    
T  2563084 agagattttttcttacaagcag 2563105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 366 - 536
Target Start/End: Original strand, 2563141 - 2563297
Alignment:
Q  366 taccattctttatcgctcaataacatcaaatttcttcatcttttcattcaacatgtgatctatatcttcttcatttaagaattaaatcataattgtcatg 465  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     
T  2563141 taccattctttattgctcaataacatcaaattttttcatcttttcattcaacatgtgatctatatcttcttcatttaagaattgaatcataattgtcatt 2563240  T
Q  466 taaggtaaattatctcttattcattaaggggtaatgtaagcatcatcactgacccatcttatctattcact 536  Q
    |||||||||||||||||              ||||||||||||||||| ||||||||||||||||||||||    
T  2563241 taaggtaaattatctct--------------taatgtaagcatcatcattgacccatcttatctattcact 2563297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 228 - 372
Target Start/End: Complemental strand, 38576964 - 38576820
Alignment:
Q  228 ttcatctctttcattcaacatgtgatcctcgtatcatttgtttcataatcgaatcatacttgtcatttgg-gtaaattacccatattcatcacggggtaa 326  Q
    ||||||||||||||||||||||||||   | | || || ||  ||||||| ||||||| |||||||| || |||||||||||  |||||| | |||||||    
T  38576964 ttcatctctttcattcaacatgtgatttccatctctttcgtaccataatcaaatcatatttgtcattaggagtaaattaccccaattcataaaggggtaa 38576865  T
Q  327 tgtaggtctcattgatagagattttttcttacaagcagctaccatt 372  Q
    |||||| ||||| |||| || ||||||||||||| ||| |||||||    
T  38576864 tgtaggcctcatcgata-aggttttttcttacaatcagttaccatt 38576820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 228 - 360
Target Start/End: Original strand, 16576296 - 16576428
Alignment:
Q  228 ttcatctctttcattcaacatgtgatcctcgtatcatttgtttcataatcgaatcatacttgtcatt-tgggtaaattacccatattcatcacggggtaa 326  Q
    |||||||| ||||||||||||||||||  | | ||||| ||| || ||||||||||||||| |||||  |||||||||| ||  |||||||| |||||||    
T  16576296 ttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattaggggtaaattaacccaattcatcaaggggtaa 16576395  T
Q  327 tgtaggtctcattgatagagattttttcttacaa 360  Q
     ||||| | ||  ||||||| |||||||||||||    
T  16576396 cgtaggccccacggatagag-ttttttcttacaa 16576428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 437
Target Start/End: Original strand, 16863485 - 16863542
Alignment:
Q  381 ctcaataacatcaaatttcttcatctt-ttcattcaacatgtgatctatatcttcttc 437  Q
    ||||| ||||||||||||||||||||| || |||||| |||||||||| |||| ||||    
T  16863485 ctcaagaacatcaaatttcttcatcttctttattcaatatgtgatctacatctccttc 16863542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 387 - 499
Target Start/End: Original strand, 42012836 - 42012948
Alignment:
Q  387 aacatcaaatttcttcatcttttcattcaacatgtgatctatatcttcttcatttaagaattaaatcataattgtcatgtaaggtaaattatctcttatt 486  Q
    ||||||||| || ||||||| || ||||||||||||||||  || | |||| || |||||||||||| || || ||||   | |||||||||||||||||    
T  42012836 aacatcaaactttttcatctatttattcaacatgtgatctccatttacttcgttcaagaattaaatcttatttatcattagaagtaaattatctcttatt 42012935  T
Q  487 cattaaggggtaa 499  Q
    |||||| ||||||    
T  42012936 cattaaagggtaa 42012948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 353
Target Start/End: Complemental strand, 22593730 - 22593643
Alignment:
Q  266 tgtttcataatcgaatcatacttgtcatttgggtaaattacc-catattcatcacggggtaatgtaggtctcattgatagagatttttt 353  Q
    ||||||| ||||||||| || |||||||| |||||||||||| |  |||||| |  |||||||||||||||||| |||| |||||||||    
T  22593730 tgtttcagaatcgaatcgtaattgtcattagggtaaattacctccaattcattaatgggtaatgtaggtctcatcgata-agatttttt 22593643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 381 - 426
Target Start/End: Original strand, 34891562 - 34891608
Alignment:
Q  381 ctcaataacatcaaatttcttcatct-tttcattcaacatgtgatct 426  Q
    ||||| ||||||||||||||||||||  |||||||||||||||||||    
T  34891562 ctcaagaacatcaaatttcttcatctccttcattcaacatgtgatct 34891608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 288
Target Start/End: Complemental strand, 37000 - 36940
Alignment:
Q  228 ttcatctctttcattcaacatgtgatcctcgtatcatttgtttcataatcgaatcatactt 288  Q
    |||||||| || ||||||||||||||| || | |||||||||||||||||||||| |||||    
T  37000 ttcatctcgtttattcaacatgtgatcttcatctcatttgtttcataatcgaatcctactt 36940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 348 - 453
Target Start/End: Complemental strand, 15131651 - 15131548
Alignment:
Q  348 ttttttcttacaagcagctaccattctttatcgctcaataacatcaaatttcttcatct-tttcattcaacatgtgatctatatcttcttcatttaagaa 446  Q
    ||||||||||| | ||| ||||||| ||||||  |||| ||||||||||||||||||||  |||||||| |||||||||| ||| | |||| ||||| ||    
T  15131651 ttttttcttactatcagttaccatt-tttatc--tcaagaacatcaaatttcttcatctccttcattcagcatgtgatctctatttacttcgtttaaaaa 15131555  T
Q  447 ttaaatc 453  Q
    |||||||    
T  15131554 ttaaatc 15131548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 228 - 308
Target Start/End: Original strand, 22050900 - 22050981
Alignment:
Q  228 ttcatctctttcattcaacatgtgatcctcgtatcatttgtttcataatcgaatcatacttgtcatt-tgggtaaattaccc 308  Q
    |||||||| |||||||||||||||||| || | |||||  ||||| |||||||||||| || |||||  |||||||||||||    
T  22050900 ttcatctccttcattcaacatgtgatcttcatctcattcctttcagaatcgaatcatatttatcattaagggtaaattaccc 22050981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 464
Target Start/End: Complemental strand, 46431196 - 46431112
Alignment:
Q  381 ctcaataacatcaaatttcttcatctt-ttcattcaacatgtgatctatatcttcttcatttaagaattaaatcataattgtcat 464  Q
    ||||||||||||||| ||||||||||| ||  ||||||| || ||||  ||||||||| || |||||| ||||| || |||||||    
T  46431196 ctcaataacatcaaacttcttcatcttcttagttcaacacgtaatcttcatcttcttctttcaagaatcaaatcttacttgtcat 46431112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 387 - 479
Target Start/End: Original strand, 20068120 - 20068213
Alignment:
Q  387 aacatcaaatttcttcatct-tttcattcaacatgtgatctatatcttcttcatttaagaattaaatcataattgtcatgtaaggtaaattatc 479  Q
    ||||||||| ||| |||||| ||||||||||||||| |||| ||||||||||| || ||||| ||||| || || ||||  |||||||| ||||    
T  20068120 aacatcaaacttcctcatctctttcattcaacatgtcatctttatcttcttcagttcagaataaaatcttacttatcattaaaggtaaaatatc 20068213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 308
Target Start/End: Complemental strand, 7556143 - 7556061
Alignment:
Q  228 ttcatctctttcattcaacatgtgatcctcgtatcatttgtt-tcataatcgaatcatacttgtcatttggg-taaattaccc 308  Q
    ||||| || |||||||||||||||||| || |||| || ||| |||||||||||||||| |||| ||| ||| ||||||||||    
T  7556143 ttcatatcattcattcaacatgtgatcttcctatctttcgttatcataatcgaatcatagttgttattagggataaattaccc 7556061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 337
Target Start/End: Original strand, 29969154 - 29969257
Alignment:
Q  237 ttcattcaacatgtgatcctcgtatcatttgtttcataatcgaatcatacttgtcattt--gggtaaattacccata-ttcatcacggggtaatgtaggt 333  Q
    |||||||||||||||||  || | || || ||| |||||||||||  |||||||||||   |||||||||| ||| | ||||||| ||||||||||||||    
T  29969154 ttcattcaacatgtgatattcatctctttcgttccataatcgaattctacttgtcattaaggggtaaattatccacaattcatcaaggggtaatgtaggt 29969253  T
Q  334 ctca 337  Q
    ||||    
T  29969254 ctca 29969257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 294
Target Start/End: Original strand, 40483729 - 40483795
Alignment:
Q  228 ttcatctctttcattcaacatgtgatcctcgtatcatttgtttcataatcgaatcatacttgtcatt 294  Q
    ||||||||  ||||||||||||||||| || | ||||| ||| || ||||||||||||||| |||||    
T  40483729 ttcatctcactcattcaacatgtgatcttcatctcattcgttccaaaatcgaatcatacttatcatt 40483795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 972932 - 972989
Alignment:
Q  228 ttcatctctttcattcaacatgtgatcctcgtatcatttgtttcataatcgaatcata 285  Q
    ||||||||||||||| ||||||| ||| || || | |||||||||||||| |||||||    
T  972932 ttcatctctttcatttaacatgttatcttcataccctttgtttcataatcaaatcata 972989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 437
Target Start/End: Complemental strand, 17736800 - 17736743
Alignment:
Q  381 ctcaataacatcaaatttcttcatctt-ttcattcaacatgtgatctatatcttcttc 437  Q
    |||||||| || ||| ||||||||||| |||| |||||||||||||| ||||||||||    
T  17736800 ctcaataatattaaacttcttcatcttcttcactcaacatgtgatctctatcttcttc 17736743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 294
Target Start/End: Original strand, 7104313 - 7104379
Alignment:
Q  228 ttcatctctttcattcaacatgtgatcctcgtatcatttgtttcataatcgaatcatacttgtcatt 294  Q
    |||||||| |||||||||||||| ||  || | || || |||||| |||||||||||||||||||||    
T  7104313 ttcatctccttcattcaacatgtaatattcatctctttcgtttcagaatcgaatcatacttgtcatt 7104379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 426
Target Start/End: Original strand, 10775052 - 10775092
Alignment:
Q  387 aacatcaaatttcttcatct-tttcattcaacatgtgatct 426  Q
    |||||||||||||||| ||| ||||||||||||||||||||    
T  10775052 aacatcaaatttcttcgtctgtttcattcaacatgtgatct 10775092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 408 - 464
Target Start/End: Original strand, 15321098 - 15321154
Alignment:
Q  408 ttcattcaacatgtgatctatatcttcttcatttaagaattaaatcataattgtcat 464  Q
    |||||||||||||| ||||  ||||  ||||||| ||||| ||||||||||||||||    
T  15321098 ttcattcaacatgtaatcttcatctctttcatttcagaatcaaatcataattgtcat 15321154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University