View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8926_high_5 (Length: 515)
Name: NF8926_high_5
Description: NF8926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8926_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Complemental strand, 35815827 - 35815338
Alignment:
| Q |
1 |
atcagaaaaatgaaaatctgatttctgagcaccccactttatttcttannnnnnncccacatatgtcccaaatcaacattcaaataaatcgaaacataaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
35815827 |
atcagaaaaatgaaaatctgatttcttagcaccccactttatttcttatttttttcccacatatgtcccaaatcaacattcaaataaatcgaaacacaaa |
35815728 |
T |
|
| Q |
101 |
aataagatagaaagagagaga----------aagtgggtcttagtcttcaaatcatttctgggccggcccatttcacggaaaatactatccgtgattccg |
190 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35815727 |
aataagatagaaagagagagagagagagagaaagtgggtcttagtcttcaaatcatttctgggccggcccatttcacggaaaatactatccgtgattccg |
35815628 |
T |
|
| Q |
191 |
cgatccactcgtgcgcgtgttaatcacccaccgttgatcttaatcatacggttaatattaaagagccattatcccctccattttttgttttaagggaaaa |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
35815627 |
cgatccactcgtgcgcgtgttaatcacccaccgttgatcttaatcaaacggttaatattaaagggccattatcccctccattttttgttttaagggaaaa |
35815528 |
T |
|
| Q |
291 |
cgacatgcattaaactagtgggctcttggatctaagggtgcatgcattatcatcatctatccctttcttcattctaccaccacacttaatcctttgttct |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35815527 |
cgacatgcattaaactagtgggctcttggatctaagggtgcatgcattatcatcatctatccctttcttcattctaccaccacacttaatcctttgttct |
35815428 |
T |
|
| Q |
391 |
ttgaggtgacatttatcttcctcttttcatcataccccacgagacacctaatcaaaaatactaatttttattttagtttctttcaaacaa |
480 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
35815427 |
ttgaggtgacatttatcttcctcttttcatcataccccacgagacacctaatcaaaaatactatttttttttttagtttctttcaaacaa |
35815338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University