View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8926_low_1 (Length: 979)
Name: NF8926_low_1
Description: NF8926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8926_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 698; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 698; E-Value: 0
Query Start/End: Original strand, 17 - 762
Target Start/End: Original strand, 47123872 - 47124619
Alignment:
| Q |
17 |
acttccccattgggaaacactctatagaattggtacttgatcttgtactttgacctcaacctagttccaagagccaaacattgttctttccttgctaatt |
116 |
Q |
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| T |
47123872 |
acttccccattgggaaacactctatagaattggtacttgatcttgtactttgacctcaacctagttccaagagccaaacattgttctttccttgctaatt |
47123971 |
T |
|
| Q |
117 |
tgagaagattgggaccttccctcatgatggctgcaccaccatttgctatttcaaaaatttgttcttttggtgaatcccatgtgatcacatgaaattcttc |
216 |
Q |
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| T |
47123972 |
tgagaagattgggaccttccctcatgatggctgcaccaccatttgctatttcaaaaatttgttcttttggtgaatcccatgtgatcacatgaaattcttc |
47124071 |
T |
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| Q |
217 |
aacttgggccttgcgtaaaaggcctccagtccagtgttaccactgaaaattggggagggagtgtttgggtctaactcaggtggggtgaagccaactggtg |
316 |
Q |
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| T |
47124072 |
aacttgggccttgcgtaaaaggcctccagtccagtgttaccactgaaaattggggagggagtgtttgggtctaactcaggtggggtgaagccaactggtg |
47124171 |
T |
|
| Q |
317 |
cttctgttgcttcctcagtaacagctgctgttttgatgttacttgaaattgtaagcttgaaaaggtttggattggtgaaggacaatgtgggtgattgttt |
416 |
Q |
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| T |
47124172 |
cttctgttgcttcctcagtaacagctgctgttttgatgttacttgaaattgtaagcttgaaaaggtttggattggtgaaggacaatgtgggtgattgttt |
47124271 |
T |
|
| Q |
417 |
ccatggtactgagacatgttcattgggtttggcactagagaaaggtggggtgaagagggtggtttgagttgccatggccattgtgagttggatacaaatg |
516 |
Q |
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| T |
47124272 |
ccatggtactgagacatgttcattgggtttggcactaaagaaaggtggggtgaagagggtggtttgagttgccatggccattgtgagttggatacaaatg |
47124371 |
T |
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| Q |
517 |
ttgcttgtagtattgcgaggaaagtgtgttgggcttgtgaaagatcaatat--cactagtactagtttgtaagttaatgattttggaagagtgttgttga |
614 |
Q |
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| T |
47124372 |
ttgcttgtagtattgcgaggaaagtgtgttgggcttgtgaaagatcaatatcacactagtactagtttgtaagttaatgattttggaagagtgttgttga |
47124471 |
T |
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| Q |
615 |
tgtggatgagattatatgatgacttggaccaattagattgtgtgattttgattcgatgtcttacaaaaagattggattcatgaaaagagtcctttgcttc |
714 |
Q |
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| T |
47124472 |
tgtggatgagattatatgatgacttggaccaattagattgtgtgattttgattcgatgtcttacaaaaagattggattcatgaaaagagtcctttgctta |
47124571 |
T |
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| Q |
715 |
nnnnnnnnntgaaaagagtcctttaccatgataagggcgtgtaacaag |
762 |
Q |
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| T |
47124572 |
aaaaaaaaatgaaaagagtcctttaccatgataagggtgtgtaacaag |
47124619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 752 - 975
Target Start/End: Original strand, 47125653 - 47125874
Alignment:
| Q |
752 |
cgtgtaacaagagcatgcttcatactcaatgttgtccttatggggaccaggaaaatgtgtcccaccatctctcattctttacctgttttgctcctaacta |
851 |
Q |
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| T |
47125653 |
cgtgtaacaagagcatgcttcatactcaatgttgtccttatggggaccaggaaaatgtgtcccaccatctctcattctttacctgttttgctcctaacta |
47125752 |
T |
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| Q |
852 |
tggagcacattttatcataacaatttataaaattggacttgtataagtttaaaaaagtaatgtaactattattcgaatatatatataacttgagtgtaac |
951 |
Q |
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| T |
47125753 |
tggagcacattttatcataacaatttataaaattggacttgtataagtttaaaaaaataatgtaactattattgg--tatatatatatcttgagtgtaac |
47125850 |
T |
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| Q |
952 |
tcaagttctgaatctgatgtccat |
975 |
Q |
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| T |
47125851 |
tcaagttctgaatctgatttccat |
47125874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 1e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 50 - 234
Target Start/End: Complemental strand, 783309 - 783125
Alignment:
| Q |
50 |
tacttgatcttgtactttgacctcaacctagttccaagagccaaacattgttctttccttgctaatttgagaagattgggaccttccctcatgatggctg |
149 |
Q |
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||||| ||||||||||| ||||| || ||| |||| | ||||||||| ||||||||||||||||| || ||||| || |||||||| ||||| ||||||| |
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| T |
783309 |
tacttaatcttgtacttagaccttaatctatttcctaaagccaaacactgttctttccttgctaacttaagaaggttaggaccttctctcattatggctg |
783210 |
T |
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| Q |
150 |
caccaccatttgctatttcaaaaatttgttcttttggtgaatcccatgtgatcacatgaaattcttcaacttgggccttgcgtaa |
234 |
Q |
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| T |
783209 |
caccaccagttggcatctcaaagatttgttccttaggtgactcccatgtgatcacatagaattcttcaacttgtgccttacgtaa |
783125 |
T |
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