View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8926_low_11 (Length: 527)
Name: NF8926_low_11
Description: NF8926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8926_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 8e-90; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 23072397 - 23072202
Alignment:
| Q |
15 |
cagagacgatgaccttgtgtcgacaaggttgagaagtaatgttgatagtaataagatcgaaatgccaaaattttgcattcctattttaaggaaggaaaag |
114 |
Q |
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| T |
23072397 |
cagagacgatgaccttgtgtcgtcaaggttgagaagcattgttgatagtaataagatcgaaaggccaaaattttgcattcctatttcaaggaaggaaaag |
23072298 |
T |
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| Q |
115 |
gaggaagatttcatgacgtttttgggtcgtgcaccgcggcagaggcccattaagaggcctaaaaaggttcagaagcagataaacgtatgttgcata |
210 |
Q |
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| T |
23072297 |
gaggaagatttcttgacgtttttgggtcgtgcaccgcggcagaggcccattaagaggcctaaaaaggttcagaagcagataaacgtatgtcgcata |
23072202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 302 - 490
Target Start/End: Complemental strand, 23072131 - 23071945
Alignment:
| Q |
302 |
agaaggttttccctggattgtggttaagagaggttactgctgaaatgtacgaggttccatgatacaaatcagaatgggagattcgagaagaggaaaagga |
401 |
Q |
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| T |
23072131 |
agaaggttttccctggactgtggttaagagaggttactgctgaaatgtacgaggttc-atgatacaaatcagaatgggagatttgggaagaggaaaatga |
23072033 |
T |
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| Q |
402 |
g-gggaagagcttttgatgatggaaactatatatcttcagtgatatatagtttttacttctgaatctttgagatggtgctattattaggg |
490 |
Q |
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| T |
23072032 |
gagggaagggcttttgatgatggaaactatat--cttcagtgatatatagtttttacttctgaacctttgagatggtgctattattaggg |
23071945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 299 - 397
Target Start/End: Complemental strand, 23127961 - 23127864
Alignment:
| Q |
299 |
tgcagaaggttttccctggattgtggttaagagaggttactgctgaaatgtacgaggttccatgatacaaatcagaatgggagattcgagaagaggaaa |
397 |
Q |
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| T |
23127961 |
tgcagaatgtttttcctggattgtggctaagtgatgttaatgctgaaaagtacaaggtt-catgatacaaatcagaatgagagatctgcgaagaggaaa |
23127864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 299 - 397
Target Start/End: Complemental strand, 23096272 - 23096175
Alignment:
| Q |
299 |
tgcagaaggttttccctggattgtggttaagagaggttactgctgaaatgtacgaggttccatgatacaaatcagaatgggagattcgagaagaggaaa |
397 |
Q |
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| T |
23096272 |
tgcagaatatttttcctggattgtggttaagagaagttaatgaagaaatgtatgaggtt-caagatacaaatcagaatgggaaatctgggaagaggaaa |
23096175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 299 - 396
Target Start/End: Complemental strand, 6963678 - 6963582
Alignment:
| Q |
299 |
tgcagaaggttttccctggattgtggttaagagaggttactgctgaaatgtacgaggttccatgatacaaatcagaatgggagattcgagaagaggaa |
396 |
Q |
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||||||| ||||||||||||||||||||||| ||||||| |||||||||||| |||||| | |||| ||||||| ||| |||||| | ||||||||| |
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| T |
6963678 |
tgcagaatgttttccctggattgtggttaagggaggttaatgctgaaatgtatgaggtt-cttgatgcaaatcaaaataggagatctgcgaagaggaa |
6963582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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