View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8926_low_12 (Length: 517)
Name: NF8926_low_12
Description: NF8926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8926_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Complemental strand, 41904862 - 41904360
Alignment:
| Q |
1 |
ctactgtaaacctgtccctctatataaactatagtattcaagaccaatctgtagcacatccctcgtatttaacccctaattgaatatgcagtctgttttc |
100 |
Q |
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| T |
41904862 |
ctactgtaaacctgtccctctatataaactatagtattcaagaccaatctgtagcacatccctcgtatttaacccctaatcgaatatgcagtctgttttc |
41904763 |
T |
|
| Q |
101 |
aatcagatctacctcatttgaaattgcaattgaaggcactgagtgagatatattgtgcattaaataacatgttcgtgcaattgcggtcatatagcaatac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
41904762 |
aatcagatctacctcatttgaaattgcaattgaaggcactgagtgagatatattgtgcattaaataacatgttcgtgcaattgcagtcatatagcaatac |
41904663 |
T |
|
| Q |
201 |
tctttcgtaaattaagcaatgactctgttataaaagggggaaatattggggaagagttttctctcattctttcctgttttatcagtaaaagtaatttttg |
300 |
Q |
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| T |
41904662 |
tctttagtaaattaagcaatgactctgttataaaagggggaaatattggggaagagttttctctcattctttcctgttttatcagtaaaagtaatttttg |
41904563 |
T |
|
| Q |
301 |
tattgcgtacaatttttaggttcataacagacctttagcatttcannnnnnnnnnnnnnnnnnncttaaatagaaaatggtttttgacataacagccaaa |
400 |
Q |
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| T |
41904562 |
tattgcgtacaatttttaggttcataacagacctttagcatttctttttttgttttgtttgtttcttaaatagaaaatggtttttgacataacagccaaa |
41904463 |
T |
|
| Q |
401 |
tatcacaaagattggcagtatttcaatcgatactgaatgtttgataggcataaacattccaaatggatcattgttttctccgactaaattcttcttttga |
500 |
Q |
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| T |
41904462 |
tatcacaaagattggcagtatttcaatcgatacagaatgtttgataggcataaacattccaaatggatcattgttttctccgactaaattcttcttttga |
41904363 |
T |
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| Q |
501 |
tgt |
503 |
Q |
| |
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||| |
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| T |
41904362 |
tgt |
41904360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 83 - 181
Target Start/End: Original strand, 28147093 - 28147192
Alignment:
| Q |
83 |
aatatgcagtctgttttcaatcagatctacctcatttgaaattgcaattgaaggcactg-agtgagatatattgtgcattaaataacatgttcgtgcaat |
181 |
Q |
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|||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||| | |||||||||||| |||||||||| | |||||||||| |
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| T |
28147093 |
aatatgcaagctgttttcaatccgatctacctcatttgaaattacaattgaaggcactgaacaaagatatattgtggattaaataacctattcgtgcaat |
28147192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 11418920 - 11418987
Alignment:
| Q |
67 |
atttaacccctaattgaatatgcagtctgttttcaatcagatctacctcatttgaaattgcaattgaa |
134 |
Q |
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| T |
11418920 |
atttaacccctaatcgaatatccaatccgagttcaatcagacccacctcttttgaaattgcaattgaa |
11418987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 22746575 - 22746629
Alignment:
| Q |
127 |
caattgaaggcactgagtgagatatattgtgcattaaataacatgttcgtgcaat |
181 |
Q |
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||||| |||||||| | ||||||||| | |||||||||||||||||||||||||| |
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| T |
22746575 |
caattaaaggcactaaatgagatatactatgcattaaataacatgttcgtgcaat |
22746629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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