View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8926_low_15 (Length: 479)
Name: NF8926_low_15
Description: NF8926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8926_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 60 - 461
Target Start/End: Complemental strand, 2451449 - 2451050
Alignment:
| Q |
60 |
cacacccatgatcagattaaggataatcgatcaaacacaagactcccacagaaggtgaaagggaccttagaagagagaacaattgaaaatttgttcttgt |
159 |
Q |
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| T |
2451449 |
cacacccatgatcagattaaggataatcgatcaaacacaagactcccacagaaggtgaaagggaccttagaagagagaacaattgaaaatttgttcttgt |
2451350 |
T |
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| Q |
160 |
tttccaattttcacttcatacctagctaagaccaagatgattggaaaacaaacgtgaattgtttattaatgggcgctcaaaatccatgtctatatatacc |
259 |
Q |
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| T |
2451349 |
tttccaattttcacttcatacctagctaagaccaagatgattggaaaacaaacgtgaattgtttattaatgggcgctcaaaatccatgtctatatatacc |
2451250 |
T |
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| Q |
260 |
ataggtataagcaagtctatatagcattagtttttatacacactatttgttagaaaatgcataccatggttagtgagcataaacattattcgtctactca |
359 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2451249 |
ataggtataagcaag--tatatagcattagtttttatacacactatttgttagaaaatgcataccatggttagtgagcataaacattattcgtctactca |
2451152 |
T |
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| Q |
360 |
tttcattgtttacaaataactacttcaattgaattaacataatatattcatcatgcaggacttgtttatatctggcctgttgttattttctattgtatca |
459 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
2451151 |
tttcattgtttacaaataactacttcaattgaattaacataatatattcatcatgcaggacttgtttatatctggtctgttgatattttctattgtatca |
2451052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 142 - 185
Target Start/End: Complemental strand, 23730041 - 23729998
Alignment:
| Q |
142 |
ttgaaaatttgttcttgttttccaattttcacttcatacctagc |
185 |
Q |
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| T |
23730041 |
ttgaaaatttgttcttgttttccaattttcacttcatacctagc |
23729998 |
T |
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