View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8926_low_17 (Length: 475)
Name: NF8926_low_17
Description: NF8926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8926_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 8 - 375
Target Start/End: Original strand, 23210832 - 23211199
Alignment:
| Q |
8 |
tgagatggacatcacatcttaacctaaatcttaagacattgagttatgagtcttataacttatatagtgttcaacatccattttttcatctaatatgaga |
107 |
Q |
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| T |
23210832 |
tgagttggacatcacatcttaacctaaatcttaagacattgagttacgggtcttataacttatatagtgttcaacatccattttttcatctaatatgaga |
23210931 |
T |
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| Q |
108 |
cttctgcgcacacttgttacataataatctctcatccatccattcatatgtgtacatgctcctcctcaattggccgcactaaacatgacacattgcccta |
207 |
Q |
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| T |
23210932 |
cttctgcgtacacttgttacataataacctctcatccatccattcatatgtgtacatgctcctcctcaattggccgcactaaacatgacacattgcccta |
23211031 |
T |
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| Q |
208 |
ccattattgttaggaagacttccggcataatgagtcattcggcgaaccaatgactatgatatcactgtaggatcatcaggggagctcgagaaacatccac |
307 |
Q |
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| T |
23211032 |
ccattattgttaggaagacttccggcataatgagtcattcggcgaaccaatgactatgatatcactgtaggatcatcaggggagctcgagaaacatccac |
23211131 |
T |
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| Q |
308 |
attgggtcaagaataaccatataaatgagttggacacttcaacttaaccctacaagtatctacgcaac |
375 |
Q |
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| T |
23211132 |
attgggtcaagaataaccatataaatgagttggacacttcaacttaaccctacaagtatctacgcaac |
23211199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 75 - 112
Target Start/End: Original strand, 38259343 - 38259380
Alignment:
| Q |
75 |
tgttcaacatccattttttcatctaatatgagacttct |
112 |
Q |
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| T |
38259343 |
tgttcaacatctattttttcatctaatatgagacttct |
38259380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 343
Target Start/End: Original strand, 41038977 - 41039019
Alignment:
| Q |
301 |
catccacattgggtcaagaataaccatataaatgagttggaca |
343 |
Q |
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| T |
41038977 |
catccgcattgggtcaagaataaccatgtaaatgagttagaca |
41039019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 356
Target Start/End: Complemental strand, 47157690 - 47157597
Alignment:
| Q |
264 |
tgatatcactgtaggatcatcaggggagctcga-gaaacatccacattgggtcaagaataaccatataaatgagttggacacttcaacttaacc |
356 |
Q |
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| T |
47157690 |
tgataccactgttggatcatgaggggagccagatgaatcatccaaattgggtcaagaacaatcacacaaatgagttggatactgcatcttaacc |
47157597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 31503515 - 31503547
Alignment:
| Q |
67 |
ttatatagtgttcaacatccattttttcatcta |
99 |
Q |
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| T |
31503515 |
ttatatagtgttcaacatccattttctcatcta |
31503547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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