View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8926_low_18 (Length: 472)
Name: NF8926_low_18
Description: NF8926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8926_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 43077971 - 43077521
Alignment:
| Q |
1 |
agaaaagggaccccaagcccttccaaggtatagtgctcctgatcccgtgaccttacagtgtacaaacgagaatcccgtgtcttctaataaactgttcctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43077971 |
agaaaagggaccccaagcccttccaaggtatagtgctcctgatcccgtgaccttacagtgtacaaacgagaatcccgtgtcttctaataaactgttcctt |
43077872 |
T |
|
| Q |
101 |
ccttgtgctgttagtgctcctatattttgtgctattgcatgcacgtgacacccctatatatgttattaccaacttcattagtcaaatttt-agaacgatt |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
43077871 |
ccttgtgctgttagtgctcctatattttgtgctattgcatgcacgtgacacccctat----gttattaccaacttcattagtcaaatttttagaacgatt |
43077776 |
T |
|
| Q |
200 |
tcatcttgaaaatgaaaatgaaactaattaattacctcaaaaagagagagagcattgccaaatatgaaatcaactgagccttcaatataacaatctttgt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
43077775 |
tcatcttgaaaatgaaaatgaaactaattaattacctcaaaaagagagagagcattgccaaatatgaaatcaacagagccttcaatataacaatctttat |
43077676 |
T |
|
| Q |
300 |
aatagtgcctaccaatatgatcatacagtgtgtcctgtgcccctaagaatttgcagccaaggaacatagcagtatcagctgaaattctcaatgccactcc |
399 |
Q |
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| T |
43077675 |
aatagtgcctaccaatatgatcatacagtgtgtcctgtgcccctaagaatttgcagccaaggaacatagcagtatcagctgaaattctcaatgccactcc |
43077576 |
T |
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| Q |
400 |
ttgttttccaactgctcctggtttaggaattggagcagtattctgtatacataca |
454 |
Q |
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| T |
43077575 |
ttgttttccaactgctcctggtttaggaattggagcagtattctgtatacataca |
43077521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 7e-47; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 2 - 157
Target Start/End: Original strand, 33964118 - 33964273
Alignment:
| Q |
2 |
gaaaagggaccccaagcccttccaaggtatagtgctcctgatcccgtgaccttacagtgtacaaacgagaatcccgtgtcttctaataaactgttccttc |
101 |
Q |
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||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||| ||||| || ||||||| ||| | |||| |||||| |
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| T |
33964118 |
gaaaaaggaccccaagctcttccaaggtatagtgctcctgaccccgtgaccttacagtttacaaatgagaaacctgtgtcttgtaacatactgctccttc |
33964217 |
T |
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| Q |
102 |
cttgtgctgttagtgctcctatattttgtgctattgcatgcacgtgacacccctat |
157 |
Q |
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| T |
33964218 |
cttgtgctgttagtgctcctgtatttcttgctattgcatgcacgtgacatccctat |
33964273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 233 - 417
Target Start/End: Original strand, 33965261 - 33965445
Alignment:
| Q |
233 |
acctcaaaaagagagagagcattgccaaatatgaaatcaactgagccttcaatataacaatctttgtaatagtgcctaccaatatgatcatacagtgtgt |
332 |
Q |
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|||||||| ||||| |||||||||||||||||||||||||| || |||||||| ||||||||||| || || || ||||||||||||||||| ||||| | |
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| T |
33965261 |
acctcaaatagagaaagagcattgccaaatatgaaatcaacagaaccttcaatgtaacaatctttatagtaatgtctaccaatatgatcataaagtgtat |
33965360 |
T |
|
| Q |
333 |
cctgtgcccctaagaatttgcagccaaggaacatagcagtatcagctgaaattctcaatgccactccttgttttccaactgctcc |
417 |
Q |
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| T |
33965361 |
cttgtgctcccaaaaatctacaccctaagaatgatgctgtgtctgctgaaattctaaatgctactgcttgttttccaattgctcc |
33965445 |
T |
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