View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8926_low_19 (Length: 467)
Name: NF8926_low_19
Description: NF8926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8926_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 20 - 452
Target Start/End: Original strand, 17449095 - 17449528
Alignment:
| Q |
20 |
tgttacaatgaaactccgttaaaaatattatctaacagatttatggtcaaagaacaattattttctacctaaaattatgagtaaaaaatgatgttaacat |
119 |
Q |
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| T |
17449095 |
tgttacaatgaaactccgttaaaaatattatctaacagatttatggtcaaagaacaattattttctacctaaaattatgagtaaaaaatgatgttaacat |
17449194 |
T |
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| Q |
120 |
taaatttgttcacttattttctccctaattaaaatccaaacccttacaaaacaaagagtgggttataaaagtttgttggattaccattattccagccata |
219 |
Q |
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| T |
17449195 |
taaatttgttcacttattttctccctaattaaaatccaaacccttacaaaacaaagagttggttataaaagtttgttggattaccattattccagctata |
17449294 |
T |
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| Q |
220 |
ctgatttgccacgatgaacatgcatgttgcaatggaaatgaagaaaataatacgaatggagaaaagcattgttgaagagaggaagatgagtggttggaaa |
319 |
Q |
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| T |
17449295 |
ctgatttgccacgatgaacatgcatgttgcaatggaaatgaagaaaataatacgaatggagaaaagcattgttgaagagaggaagatgagtggttggaaa |
17449394 |
T |
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| Q |
320 |
gcaagaggtttgaaagaagggaatgaaattatattgagtgagaggtttggttgatgagagttggagaagaagggaaattctaacttttcttttctttgtt |
419 |
Q |
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| T |
17449395 |
gcaagaggtttgaaagaagggaatgaaattatattgagtgagaggttcggttgatgagagttggagaagaagggaaattctaacttttcttttctttgtt |
17449494 |
T |
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| Q |
420 |
atcgata-ttcttccattgatttgtgagtgaaat |
452 |
Q |
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| T |
17449495 |
atcgatatttcttccattgatttgtgagtgaaat |
17449528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 398 - 452
Target Start/End: Original strand, 17449910 - 17449968
Alignment:
| Q |
398 |
tctaacttttcttttcttt---gttatcgatatt-cttccattgatttgtgagtgaaat |
452 |
Q |
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| T |
17449910 |
tctaagttttcttttcttttctgttatagatatttcttccattgatttgtgagtgaaat |
17449968 |
T |
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