View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8926_low_21 (Length: 429)
Name: NF8926_low_21
Description: NF8926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8926_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 21706011 - 21705597
Alignment:
| Q |
1 |
tggtatttgtgacaagaatgatgttcatgatcacattcaccaaatatatatttcagctcaggagcgcctattatatatatcgattgcagccgtgaaagtc |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
21706011 |
tggtatttgtgagaagaatgatgttcatgatcacattcaccaaatatatatttcagctcaggaacgcctattatatatatcgattgtagccgtgaaagtc |
21705912 |
T |
|
| Q |
101 |
cttccacataactgattgggaatatcgactttaacaacggacaatcataaattctaactgtccttagactaggcatgagaaaatgagaattcatttgatc |
200 |
Q |
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| T |
21705911 |
cttccacataacagaatgggaatatcgactttaacaacggacaatcactaatcataactctccttagactaggcatgagaaaatgagaattcatttgatc |
21705812 |
T |
|
| Q |
201 |
tggaactatatcctctcttgtgttacaaccatcatgctctcttccactggccgcaattataagcttcaattcatgacatccacctatttccagatcttct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||| ||| |||||| |
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| T |
21705811 |
tggaactatatcctctcttgtgttacaaccatcatgctctcttccactggccgcaattataagcttcaattcacgacattcacgtatgcgcagctcttct |
21705712 |
T |
|
| Q |
301 |
aatttttgcagactttgagcaacagatgtcgggaagagtacttcaccagacttgcatgagactaagctgaggatcttgagattctgcaagttacattccc |
400 |
Q |
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| T |
21705711 |
aatttttgcagactttgagcaacagatgtcgggaagagtacttcaccagacttgcatgagaataagatgaggatcttgagattctgcaagttacattccc |
21705612 |
T |
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| Q |
401 |
gtggaaatgtgatgt |
415 |
Q |
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| T |
21705611 |
gtggaaatgtgatgt |
21705597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 223 - 414
Target Start/End: Original strand, 21713718 - 21713909
Alignment:
| Q |
223 |
ttacaaccatcatgctctcttccactggccgcaattataagcttcaattcatgacatccacctatttccagatcttctaatttttgcagactttgagcaa |
322 |
Q |
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||||||| | ||||||||||||||| || ||||||||||||||||||||||| || || ||||| ||| | |||||||| ||||||||||||||||| |
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| T |
21713718 |
ttacaacaaccatgctctcttccacctgcagcaattataagcttcaattcatggcaattacgtattttcagttgttctaattgttgcagactttgagcaa |
21713817 |
T |
|
| Q |
323 |
cagatgtcgggaagagtacttcaccagacttgcatgagactaagctgaggatcttgagattctgcaagttacattcccgtggaaatgtgatg |
414 |
Q |
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| T |
21713818 |
cagatttcggaaagagtacttcaccagacttgcaatactctaaactgaggatcttgagattctgcaagttacattcccgtggaaatgtgatg |
21713909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 2 - 187
Target Start/End: Original strand, 21713521 - 21713706
Alignment:
| Q |
2 |
ggtatttgtgacaagaatgatgttcatgatcacattcaccaaatatatatttcagctcaggagcgcctattatatatatcgattgcagccgtgaaagtcc |
101 |
Q |
| |
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|||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||| || | | ||||| |||| || |||| || |||||| |
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| T |
21713521 |
ggtattggtgagatgaatgatgttcatgatcacattcaccaaatatatatttcagctcatgaccttttgctatatgtatccgtttcagctctgcaagtcc |
21713620 |
T |
|
| Q |
102 |
ttccacataactgattgggaatatcgactttaacaacggacaatcataaattctaactgtccttagactaggcatgagaaaatgag |
187 |
Q |
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| T |
21713621 |
ttcgacatagcagatggggaatatcgactctaacatcggacaatccagaatcgtaacttcccttagactagacatgagaaaatgag |
21713706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 180 - 345
Target Start/End: Complemental strand, 21117249 - 21117084
Alignment:
| Q |
180 |
aaaatgagaattcatttgatctggaactatatcctctcttgtgttacaaccatcatgctctcttccactggccgcaattataagcttcaattcatgacat |
279 |
Q |
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|||||||||||||||| || ||||| ||| ||||| ||||| |||| |||| |||| | |||||||| || ||||||||| ||||||||| || || |
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| T |
21117249 |
aaaatgagaattcattggagctggacttatttcctcacttgtattactaccaccatgttgccttccactagcagcaattatatgcttcaatttatagcac |
21117150 |
T |
|
| Q |
280 |
ccacctatttccagatcttctaatttttgcagactttgagcaacagatgtcgggaagagtacttca |
345 |
Q |
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| T |
21117149 |
ccactgatttttagttgttctagttgctgcaaactttgagcaacagatgctgagaagagtacttca |
21117084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 274
Target Start/End: Complemental strand, 21124676 - 21124582
Alignment:
| Q |
180 |
aaaatgagaattcatttgatctggaactatatcctctcttgtgttacaaccatcatgctctcttccactggccgcaattataagcttcaattcat |
274 |
Q |
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|||||||||||||||| || ||||| ||| ||||| ||||| |||| |||| |||| | |||||||| || ||||||||| |||||||||||| |
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| T |
21124676 |
aaaatgagaattcattggagctggacttatttcctcacttgtattactaccaccatgttggcttccactagcagcaattatatgcttcaattcat |
21124582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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