View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8926_low_24 (Length: 389)

Name: NF8926_low_24
Description: NF8926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8926_low_24
NF8926_low_24
[»] chr4 (15 HSPs)
chr4 (31-254)||(5159707-5159934)
chr4 (31-256)||(5195352-5195578)
chr4 (34-256)||(5172630-5172852)
chr4 (34-256)||(4842673-4842895)
chr4 (31-256)||(5181954-5182184)
chr4 (249-389)||(5159986-5160127)
chr4 (249-389)||(5195628-5195769)
chr4 (252-389)||(5172905-5173043)
chr4 (252-389)||(4842482-4842620)
chr4 (114-256)||(5213602-5213744)
chr4 (249-389)||(5182234-5182372)
chr4 (249-389)||(4856959-4857097)
chr4 (249-389)||(5213794-5213932)
chr4 (252-367)||(5202773-5202885)
chr4 (339-386)||(7142256-7142304)


Alignment Details
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 31 - 254
Target Start/End: Original strand, 5159707 - 5159934
Alignment:
Q  31 atgtatatattgacgccattggaaaaactttaagatttttatgataatgtcaatttttgtaaagatgacaggacatagttaa----ttatgacaggatta 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||| ||    
T  5159707 atgtatatattgacgccattggaaaaactttaagatttttatgataatgtcaatttttgtaaagatgacaggacatagttaattaattatgacaggacta 5159806  T
Q  127 tgcaatttgaaggatttggaagaactagatatcaactataacatgtttggtgctaaacttcctgagtgtttaagcaacttaacaaacctcagacttcttg 226  Q
    ||||||||||||||||||| |||||| ||||||| | | ||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  5159807 tgcaatttgaaggatttggtagaactggatatcagccagaacatgtttagtgctaaatttcctgagtgtttaagcaacttaacaaacctcagagttcttg 5159906  T
Q  227 atcttagcgataatttgttcagtggaaa 254  Q
    | |||||  ||||| |||||||||||||    
T  5159907 aacttagtaataatctgttcagtggaaa 5159934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 31 - 256
Target Start/End: Original strand, 5195352 - 5195578
Alignment:
Q  31 atgtatatattgacgccattggaaaaacttt-aagatttttatgataatgtcaatttttgtaaagatgacaggacatagttaattatgacaggattatgc 129  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5195352 atgtatatattgacgccattggaaaaacttttaagatttttatgataatgtcaatttttgtaaagatgacaggacatagttaattatgacaggactatgc 5195451  T
Q  130 aatttgaaggatttggaagaactagatatcaactataacatgtttggtgctaaacttcctgagtgtttaagcaacttaacaaacctcagacttcttgatc 229  Q
    ||||| |||||||||| |||||| ||||||| | | ||||||||| ||||||||||||| || ||||||||||||||||||||||||||| ||||||| |    
T  5195452 aattttaaggatttggtagaactggatatcagcaaaaacatgtttagtgctaaacttccagattgtttaagcaacttaacaaacctcagagttcttgaac 5195551  T
Q  230 ttagcgataatttgttcagtggaaatt 256  Q
    ||||  ||||| |||||||||||||||    
T  5195552 ttagtaataatctgttcagtggaaatt 5195578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 34 - 256
Target Start/End: Original strand, 5172630 - 5172852
Alignment:
Q  34 tatatattgacgccattggaaaaactttaagatttttatgataatgtcaatttttgtaaagatgacaggacatagttaattatgacaggattatgcaatt 133  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||    
T  5172630 tatatattgagtccattggaaaaactttaagatttttatgataatgtcaatttttgtaaagataactggacatagttaattatgacaggactatgcaatt 5172729  T
Q  134 tgaaggatttggaagaactagatatcaactataacatgtttggtgctaaacttcctgagtgtttaagcaacttaacaaacctcagacttcttgatcttag 233  Q
    |||||||||||| |||||| ||||||| | | ||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||    
T  5172730 tgaaggatttggtagaactggatatcagcaaaaacatgtttggggctaaacttcctgagtgtttaagtaacttaacaaacctcagaattcttgaccttag 5172829  T
Q  234 cgataatttgttcagtggaaatt 256  Q
    | ||||| | |||||||||||||    
T  5172830 ccataatctattcagtggaaatt 5172852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 34 - 256
Target Start/End: Complemental strand, 4842895 - 4842673
Alignment:
Q  34 tatatattgacgccattggaaaaactttaagatttttatgataatgtcaatttttgtaaagatgacaggacatagttaattatgacaggattatgcaatt 133  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||| |||||||  ||||||||| ||||||||||||||||||||||| |||||||||    
T  4842895 tatatattgagtccattggaaaaactttaagatttttatgataatgttaattttttgaaagatgaccggacatagttaattatgacaggactatgcaatt 4842796  T
Q  134 tgaaggatttggaagaactagatatcaactataacatgtttggtgctaaacttcctgagtgtttaagcaacttaacaaacctcagacttcttgatcttag 233  Q
    ||||||||||||||||||| ||||||| | | ||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||    
T  4842795 tgaaggatttggaagaactggatatcagcaaaaacatgtttggggctaaacttcctgagtgtttaagtaacttaacaaacctcagaattcttgaccttag 4842696  T
Q  234 cgataatttgttcagtggaaatt 256  Q
    | ||||| ||||| |||||||||    
T  4842695 ccataatctgttcggtggaaatt 4842673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 31 - 256
Target Start/End: Original strand, 5181954 - 5182184
Alignment:
Q  31 atgtatatattgacgccattggaaaaacttt-aagatttttatgataatgtcaatttttgtaaagatgacaggacatagttaa----ttatgacaggatt 125  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    ||||||||||| |    
T  5181954 atgtatatattgacgccattggaaaaacttttaagatttttatgataatgtcaatttttgtatagatgacaggacatagttaattaattatgacaggact 5182053  T
Q  126 atgcaatttgaaggatttggaagaactagatatcaactataacatgtttggtgctaaacttcctgagtgtttaagcaacttaacaaacctcagacttctt 225  Q
    |||||||||||||||||||| |||| | ||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||| |||||    
T  5182054 atgcaatttgaaggatttggtagaattggatatcagctataacatgtttagtgctaaacttccagagtgtttaagcaacttaacaaaccttagagttctt 5182153  T
Q  226 gatcttagcgataatttgttcagtggaaatt 256  Q
    || |||||  ||||| |||||||||||||||    
T  5182154 gaacttagtaataatctgttcagtggaaatt 5182184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 249 - 389
Target Start/End: Original strand, 5159986 - 5160127
Alignment:
Q  249 tggaaattacatgcaaggatcattttcattgagcactttggctaatcatttcaatcttcgggttctatatatttcatcgaaaaacagcactggagtacac 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||| |||||||  | ||||||| ||    
T  5159986 tggaaattacatgcaaggatcattttcattgagcactttggctaatcattccaatcttgaggttctatatatttcatcaaaaaacaatattggagtagac 5160085  T
Q  349 attgaaactgaaaaaac-aagtggtttcctaaatttcaattg 389  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  5160086 attgaaactgaaaaaacaaagtggtttcctaaatttcaattg 5160127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 249 - 389
Target Start/End: Original strand, 5195628 - 5195769
Alignment:
Q  249 tggaaattacatgcaaggatcattttcattgagcactttggctaatcatttcaatcttcgggttctatatatttcatcgaaaaacagcactggagtacac 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||| |||||||  | ||||||| ||    
T  5195628 tggaaattacatgcaaggatcattttcattgagcactttggctaatcattccaatcttgaggttctatatatttcatcaaaaaacaatattggagtagac 5195727  T
Q  349 attgaaactgaaaaaac-aagtggtttcctaaatttcaattg 389  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  5195728 attgaaactgaaaaaacaaagtggtttcctaaatttcaattg 5195769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 252 - 389
Target Start/End: Original strand, 5172905 - 5173043
Alignment:
Q  252 aaattacatgcaaggatcattttcattgagcactttggctaatcatttcaatcttcgggttctatatatttcatcgaaaaacagcactggagtacacatt 351  Q
    ||||||||||||||||||||||||| | | || |||||||||||| | |||||||| |  |||| |||||||||||||||||||||||||||||||||||    
T  5172905 aaattacatgcaaggatcattttcacttatcattttggctaatcactccaatcttcagcatctacatatttcatcgaaaaacagcactggagtacacatt 5173004  T
Q  352 gaaactgaaaaaac-aagtggtttcctaaatttcaattg 389  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  5173005 gaaactgaaaaaacaaagtggtttcctaaatttcaattg 5173043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 252 - 389
Target Start/End: Complemental strand, 4842620 - 4842482
Alignment:
Q  252 aaattacatgcaaggatcattttcattgagcactttggctaatcatttcaatcttcgggttctatatatttcatcgaaaaacagcactggagtacacatt 351  Q
    ||||||||||||||||||||||||| | | || |||||||||||| | |||||||| |  ||||||||||||||| |||||||| | |||||||||||||    
T  4842620 aaattacatgcaaggatcattttcacttatcaatttggctaatcactccaatcttcagcatctatatatttcatctaaaaacagtattggagtacacatt 4842521  T
Q  352 gaaactgaaaaaac-aagtggtttcctaaatttcaattg 389  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  4842520 gaaactgaaaaaacaaagtggtttcctaaatttcaattg 4842482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 114 - 256
Target Start/End: Original strand, 5213602 - 5213744
Alignment:
Q  114 tatgacaggattatgcaatttgaaggatttggaagaactagatatcaactataacatgtttggtgctaaacttcctgagtgtttaagcaacttaacaaac 213  Q
    |||||||||| ||||||| ||||||||||||| ||| |||||||||| ||||||||||||| | ||  ||||||| ||||||||||||||||||||||||    
T  5213602 tatgacaggactatgcaaattgaaggatttggtagagctagatatcagctataacatgtttagcgcgcaacttcccgagtgtttaagcaacttaacaaac 5213701  T
Q  214 ctcagacttcttgatcttagcgataatttgttcagtggaaatt 256  Q
    || |   ||||||| |||||| |||||||||||||||||||||    
T  5213702 ctgaatgttcttgaacttagctataatttgttcagtggaaatt 5213744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 249 - 389
Target Start/End: Original strand, 5182234 - 5182372
Alignment:
Q  249 tggaaattacatgcaaggatcattttcattgagcactttggctaatcatttcaatcttcgggttctatatatttcatcgaaaaacagcactggagtacac 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||| |  ||||||||||||| || |||||||   |||||| | |    
T  5182234 tggaaattacatgcaaggatcattttcattgagcactttggctaatcactcaaatcttcagcatctatatatttcaccggaaaacag---tggagttctc 5182330  T
Q  349 attgaaactgaaaaaac-aagtggtttcctaaatttcaattg 389  Q
    |||||||||||||| || ||||||||||| ||||||||||||    
T  5182331 attgaaactgaaaagacaaagtggtttcccaaatttcaattg 5182372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 249 - 389
Target Start/End: Complemental strand, 4857097 - 4856959
Alignment:
Q  249 tggaaattacatgcaaggatcattttcattgagcactttggctaatcatttcaatcttcgggttctatatatttcatcgaaaaacagcactggagtacac 348  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |  ||||||| |  ||||||||||||| || |||||||   |||||| | |    
T  4857097 tggaaattacatgcaaggatcattttcattgaccactttggctaatcactcaaatcttcagcatctatatatttcaccggaaaacag---tggagttctc 4857001  T
Q  349 attgaaactgaaaaaac-aagtggtttcctaaatttcaattg 389  Q
    |||||||||||||| || ||||||||||| ||||||||||||    
T  4857000 attgaaactgaaaagacaaagtggtttcccaaatttcaattg 4856959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 249 - 389
Target Start/End: Original strand, 5213794 - 5213932
Alignment:
Q  249 tggaaattacatgcaaggatcattttcattgagcactttggctaatcatttcaatcttcgggttctatatatttcatcgaaaaacagcactggagtacac 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | |||||| | |  |||||||||||||||   | | |||| ||| | | ||    
T  5213794 tggaaattacatgcaaggatcattttcattgagcactttggctaatcactccaatctccagcatctatatatttcatc---acaaagcattggtgcaaac 5213890  T
Q  349 attgaaactgaaaaaac-aagtggtttcctaaatttcaattg 389  Q
    |||||||||||||| || |||||||| || ||||||||||||    
T  5213891 attgaaactgaaaagacaaagtggttacccaaatttcaattg 5213932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 367
Target Start/End: Original strand, 5202773 - 5202885
Alignment:
Q  252 aaattacatgcaaggatcattttcattgagcactttggctaatcatttcaatcttcgggttctatatatttcatcgaaaaacagcactggagtacacatt 351  Q
    |||| ||| ||||||| |||||||| | ||||||||||||||||| ||||  |||| || |||||||||||| ||   | | |||| ||||| |||||||    
T  5202773 aaatcacacgcaaggaccattttcagtaagcactttggctaatcacttcacgcttcaggatctatatatttcctc---agaaagcattggagaacacatt 5202869  T
Q  352 gaaactgaaaaaacaa 367  Q
    |||||| |||||||||    
T  5202870 gaaacttaaaaaacaa 5202885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 339 - 386
Target Start/End: Original strand, 7142256 - 7142304
Alignment:
Q  339 tggagtacacattgaaactgaaaaaac-aagtggtttcctaaatttcaa 386  Q
    |||||||||| ||||||||||||| || ||||||||||||| |||||||    
T  7142256 tggagtacacgttgaaactgaaaatacaaagtggtttcctagatttcaa 7142304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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