View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8926_low_25 (Length: 381)
Name: NF8926_low_25
Description: NF8926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8926_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 17 - 379
Target Start/End: Original strand, 35894023 - 35894385
Alignment:
| Q |
17 |
agttaggacacccaagaacaccaaccaccacttctccatcctctacaagtgataaagctacagcatattgatcaccatttacaaatcccaatttaccatc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35894023 |
agttaggacacccaagaacaccaaccaccacttctccatcctctacgagtgataaagctacagcatattgatcaccatttacaaatcccaatttaccatc |
35894122 |
T |
|
| Q |
117 |
aagaggacttagtgcccaaaatcttccggaatgacccccaactgagttgcagtgactaatgatttcaagaacctctgaagttctaagagctgattttggt |
216 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35894123 |
aagaggacttagtgcccaaaatcttcccgaatgacccccaactgagttgcagtgactaatgatttcaagaacctctgaagttccaagagctgattttggt |
35894222 |
T |
|
| Q |
217 |
gcttcagctccaaataaagatgcttcagatagacattcattcacaatttttactacagtttctagcagttcagatgcattagtgttggagagagtctgaa |
316 |
Q |
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||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35894223 |
gcttcagctccaaataaaggtgcttcagatagacaatcattcacaatttttactacagtttctagcagttcagatgcattagtgttggagagagtctgaa |
35894322 |
T |
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| Q |
317 |
cctcctcttcagctagaatagagatattgtcaccccctaaacattcagatgatgtccatctca |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||| |
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| T |
35894323 |
cctcctcttcagctagaatagagatattgtcaccccctaaacattcagataatatccagctca |
35894385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 22 - 344
Target Start/End: Complemental strand, 3111997 - 3111675
Alignment:
| Q |
22 |
ggacacccaagaacaccaaccaccacttctccatcctctacaagtgataaagctacagcatattgatcaccatttacaaatcccaatttaccatcaagag |
121 |
Q |
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| T |
3111997 |
ggacagccaagaacaccaagcactacttctccatcctctacgagcgctagagctacagcatattgatcgccacgaacaaacccgagtgtgccatcaacag |
3111898 |
T |
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| Q |
122 |
gacttagtgcccaaaatcttccggaatgacccccaactgagttgcagtgactaatgatttcaagaacctctgaagttctaagagctgattttggtgcttc |
221 |
Q |
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|| |||| ||||||||||||| || |||| || |||||||||| |||| || || || ||||| |||||| ||| ||| | ||||||||| | |
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| T |
3111897 |
gatctagtacccaaaatcttccagatggaccaccggttgagttgcagcgacttataatatcgagaacttctgaatttccaagtggtgattttggcttctg |
3111798 |
T |
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| Q |
222 |
agctccaaataaagatgcttcagatagacattcattcacaatttttactacagtttctagcagttcagatgcattagtgttggagagagtctgaacctcc |
321 |
Q |
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| | |||||| || ||||||| ||| || ||||||||| |||| || |||| |||| |||||||||||||||| ||||||||||| ||||| || |
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| T |
3111797 |
aacaccaaatcgaggcgcttcagctaggcaatcattcacagttttaaccacagagtctaatagttcagatgcattagatttggagagagtttgaacatct |
3111698 |
T |
|
| Q |
322 |
tcttcagctagaatagagatatt |
344 |
Q |
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|||||||||| ||| |||||||| |
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| T |
3111697 |
tcttcagctacaattgagatatt |
3111675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 331
Target Start/End: Original strand, 19058495 - 19058588
Alignment:
| Q |
238 |
gcttcagatagacattcattcacaatttttactacagtttctagcagttcagatgcattagtgttggagagagtctgaacctcctcttcagcta |
331 |
Q |
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||||||| ||| || |||||||||||||| || || | |||| |||||||||||||||| ||||||||||| ||||| | |||||||||| |
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| T |
19058495 |
gcttcagttaggcaatcattcacaattttaaccacggagtctaatagttcagatgcattagatttggagagagtttgaacattttcttcagcta |
19058588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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