View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8926_low_27 (Length: 379)
Name: NF8926_low_27
Description: NF8926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8926_low_27 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 245
Target Start/End: Original strand, 31872612 - 31872838
Alignment:
| Q |
20 |
aggcctcaccccatttggatactttctttctcttgggctaaagaaataccattcattttcctcaaactcagatttatctgcattctataattggtcagtg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31872612 |
aggcctcaccccatttggatactttctttctcttgggctaaagaaataccattcattttcctcaaactcagatttatctgcattctataattggtcagtg |
31872711 |
T |
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| Q |
120 |
cctaataaaaagcaaagcagacacaactatataacactgacacttaagattgaagacgtgaccaatacacgtcactaacacatatgtacatttaatta-t |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
31872712 |
cctaataaaaagcaaagcagacacaactatataacactaacactttagattgaagacgtgaccaatacacgtcactaacacatatgtacattcaattact |
31872811 |
T |
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| Q |
219 |
tttattttctcaaattatgtgttagtg |
245 |
Q |
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| T |
31872812 |
tttattttctcaaattatgtgttagtg |
31872838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 264 - 367
Target Start/End: Original strand, 31872827 - 31872930
Alignment:
| Q |
264 |
tatgtgttagtgcttcgtagatgcagaaataaaatgatcacattatgaagtgcaatacatacatatttaagcataataacaaaaatatgtgaaaaaagct |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
31872827 |
tatgtgttagtgcttcgtagatgcagaaataaaatgatcacattatgaagtgcaatacatacatatttaagcataataacaaaaatatgtgaaaaaagat |
31872926 |
T |
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| Q |
364 |
gtta |
367 |
Q |
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|||| |
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| T |
31872927 |
gtta |
31872930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 103
Target Start/End: Original strand, 18428735 - 18428814
Alignment:
| Q |
24 |
ctcaccccatttggatactttctttctcttgggctaaagaaataccattcattttcctcaaactcagatttatctgcatt |
103 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||| | |||||||||||||| |
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| T |
18428735 |
ctcaccccatttggatactttctttctcttggagtaaaaaaataccattcattttctccaaagcctgatttatctgcatt |
18428814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 33727874 - 33727830
Alignment:
| Q |
29 |
cccatttggatactttctttctcttgggctaaagaaataccattc |
73 |
Q |
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| T |
33727874 |
cccatttggatacttcctatctcttggactaaagaaataccattc |
33727830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 236
Target Start/End: Original strand, 151419 - 151449
Alignment:
| Q |
206 |
tacatttaattattttattttctcaaattat |
236 |
Q |
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| T |
151419 |
tacatttaattattttattttctcaaattat |
151449 |
T |
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