View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8926_low_3 (Length: 685)
Name: NF8926_low_3
Description: NF8926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8926_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 16 - 290
Target Start/End: Complemental strand, 9400812 - 9400538
Alignment:
| Q |
16 |
aatgagataccattatctgttataatctgaaatatgtgtcgcttggtctaactagagtaagcttgctaagctgtatagaatatatacagctttgcaaact |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9400812 |
aatgagataccattatctgttataatctgaaatatgtgtcgtttggtctaactagagtaagcttgctaagctgtatagaatatatacagctttgcaaact |
9400713 |
T |
|
| Q |
116 |
gagaaagttttgatttcagcttgtttcaggggctgaatagagcatccgcagtctgtctccactgttgtgcgcctgttctcctgtttcaattggttttttc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
9400712 |
gagaaagttttgatttcagcttgtttcaggggctgattagagcatccgcagtccgtctccactgttgtgcgcctgttctcctgtttcaattagttttttc |
9400613 |
T |
|
| Q |
216 |
ctacgtctcgggtctgctttgcactgagtagattgtatcagtgttttgcagtctatcaggtgcacctgtgctgca |
290 |
Q |
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||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
9400612 |
ctaggtctcaggtctgctttgcactgagtagattgtatcagtgttttgcagtctgtcaggtgcacctgagctgca |
9400538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 352 - 671
Target Start/End: Complemental strand, 9400466 - 9400144
Alignment:
| Q |
352 |
gacattcctagtcgagtcttgatgcatcagttttgtattcttctagccctccttgttacaacttgttccggtaggtggcctatc---attaattttgccg |
448 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||| |
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| T |
9400466 |
gacattcctagtcgagtcttgatgcatcagttttgtattcttctagccctccttgttacaacttgttctggtaagtggcctatcggtattaattttgccg |
9400367 |
T |
|
| Q |
449 |
attcnnnnnnnnnnnnnnnnnttgatagtgtaaactgaagttggattggtggtctccgtcttagtttccttggatataaatattggagcaatttatttga |
548 |
Q |
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|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
9400366 |
attcaaaaataaaaaataaaattgatagtgtaaactgaagttgaattggtggtctccgtcttagtttccttggatataaatattgaagcaatttatttga |
9400267 |
T |
|
| Q |
549 |
taattctcaattgtgtgtagaaagcaacagtttattgacatatttagattagattttgttttcatgtaccaaaaaggttattctattttcttgttcttaa |
648 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
9400266 |
taattctcaattgtgtgtagaaagcaacagtttattgacatatttagattagattttgttgtcatgtaccaaaaaggttattctattttcttgttcttaa |
9400167 |
T |
|
| Q |
649 |
tttaattgaaccatatatgatgt |
671 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
9400166 |
tttaattgaaccatatatgatgt |
9400144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 290
Target Start/End: Complemental strand, 9419360 - 9419089
Alignment:
| Q |
19 |
gagataccattatctgttataatctgaaatatgtgtcgcttggtctaactagagtaagcttgctaagctgtatagaatatatacagctttgcaaactgag |
118 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
9419360 |
gagatacccttatctgttataatctgaaatatgtgtcgtttggtctaactagagtaagcttgctaagctgcatagaatatatacagctttgcaaactgag |
9419261 |
T |
|
| Q |
119 |
aaagttttgatttcagcttgtttcaggggctgaatagagcatccgcagtctgtctccactgttgtgcgcctgttctcctgtttcaattggttttttccta |
218 |
Q |
| |
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|||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9419260 |
aaagttgtgatttcagcttgtttcaggggctgattagagcatccgcagtccgtctccactgttgtgcgcctgttctcctgtttcaattggttttttccta |
9419161 |
T |
|
| Q |
219 |
cgtctcgggtctgctttgcactgagtagattgtatcagtgttttgcagtctatcaggtgcacctgtgctgca |
290 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
9419160 |
gggctcgggtctgctttgcactgagtagattgtatcagtgttttgtagtctgtcaggtgcacctgtgctgca |
9419089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 352 - 671
Target Start/End: Complemental strand, 9419028 - 9418707
Alignment:
| Q |
352 |
gacattcctagtcgagtcttgatgcatcagttttgtattcttctagccctccttgttacaacttgttccggtaggtggcctatca---ttaattttgccg |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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|
| T |
9419028 |
gacattcctagtcgagtcttgatgcatcagttttgtattcttttagccctccttgttacaacttgttccggtaagtggcctatcagtattaattttgccg |
9418929 |
T |
|
| Q |
449 |
attcnnnnnnnnnnnnnnnnnttgatagtgtaaactgaagttggattggtggtctccgtcttagtttccttggatataaatattggagcaatttatttga |
548 |
Q |
| |
|
|||| ||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
9418928 |
attcaaaaataaaaaataaaattgatggtgtaaactgaagttgaattggtgatctccgtcttagtttccttggatataaatattgaagcaatttatttga |
9418829 |
T |
|
| Q |
549 |
taattctcaattgtgtgtagaaagcaacagtttattgacatatttagattagattttgttttcatgtaccaaaaa-ggttattctattttcttgttctta |
647 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
9418828 |
taattctcaattgtgtgtagaaagcagcagtttattgacatattt--attagattttgttttcatgtaccaaaaagggttattctattttcttgttctta |
9418731 |
T |
|
| Q |
648 |
atttaattgaaccatatatgatgt |
671 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
9418730 |
atttaattgaaccatatatgatgt |
9418707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 9431673 - 9431491
Alignment:
| Q |
19 |
gagataccattatctgttataatctgaaatatgtgtcgcttggtctaactagagtaagcttgctaagctgtatagaatatatacagctttgcaaactgag |
118 |
Q |
| |
|
||||||| ||||| |||||||||||| |||| ||| ||||||||||||||||| ||| ||||||||||||||| |||| |||||||| ||| ||||| |
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| T |
9431673 |
gagatacacttatcagttataatctgatatattcgtcttttggtctaactagagtatgctagctaagctgtatagagtatagacagcttttcaatctgag |
9431574 |
T |
|
| Q |
119 |
aaagttttgatttcagcttgtttcaggggctgaatagagcatccgcagtctgtctccactgttgtgcgcctgttctcctgttt |
201 |
Q |
| |
|
|| | | |||||||||||||||||||||||||| |||||||||| ||||| ||||||||| ||||| ||||||||||||| |
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| T |
9431573 |
aatgctgtgatttcagcttgtttcaggggctgattagagcatcctcagtccgtctccacttctgtgcaagtgttctcctgttt |
9431491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 9410664 - 9410479
Alignment:
| Q |
19 |
gagataccattatctgttataatctgaaatatgtgtcgcttggtctaactagagtaagcttgctaagctgtatagaatatatacagctttgcaaactgag |
118 |
Q |
| |
|
||||||| ||||| ||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||| |
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| T |
9410664 |
gagatactgttatcagttataatctgctatatgtgtcttttggtctaactagagtaagctagctaagctgtatagagtatagacagctttgcaaactgag |
9410565 |
T |
|
| Q |
119 |
aaagttttgatttcagc----------ttgtttcaggggctgaatagagcatccgcagtctgtctccactgttgtgcgcctgttct |
194 |
Q |
| |
|
|| | | |||||||||| |||||||||||||||| | |||||||||||||| |||||| ||||||||| | |||||| |
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|
| T |
9410564 |
aatgctgtgatttcagctagttgggagttgtttcaggggctgatttgagcatccgcagtccgtctccgctgttgtgcacgtgttct |
9410479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 358 - 452
Target Start/End: Complemental strand, 9410345 - 9410248
Alignment:
| Q |
358 |
cctagtcgagtcttgatgcatcagttttgtattcttctagccctccttgttacaacttgttccggtaggtggcctatc---attaattttgccgattc |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||| |
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|
| T |
9410345 |
cctagtcgagtcttgatgcatcagttttgtattcctctagccctccttgttacaacttgttccggtaagtggcctatcggtattaattttgctgattc |
9410248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 588 - 671
Target Start/End: Complemental strand, 9409703 - 9409620
Alignment:
| Q |
588 |
atatttagattagattttgttttcatgtaccaaaaaggttattctattttcttgttcttaatttaattgaaccatatatgatgt |
671 |
Q |
| |
|
|||||||||||| ||||| |||| ||||| |||||||||||||||||||||||||||||| ||||||||| |||||| ||||| |
|
|
| T |
9409703 |
atatttagattatattttattttaatgtatcaaaaaggttattctattttcttgttcttatattaattgaatcatataggatgt |
9409620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 588 - 671
Target Start/End: Complemental strand, 9431021 - 9430938
Alignment:
| Q |
588 |
atatttagattagattttgttttcatgtaccaaaaaggttattctattttcttgttcttaatttaattgaaccatatatgatgt |
671 |
Q |
| |
|
|||||||||||| ||||| |||| ||||| |||||||||||||||||||||||||||||| |||| |||| |||||| ||||| |
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|
| T |
9431021 |
atatttagattatattttattttaatgtatcaaaaaggttattctattttcttgttcttatattaactgaatcatataggatgt |
9430938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 226 - 279
Target Start/End: Complemental strand, 9410476 - 9410423
Alignment:
| Q |
226 |
ggtctgctttgcactgagtagattgtatcagtgttttgcagtctatcaggtgca |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
9410476 |
ggtctgctttgcactgagtagattgtatcagtgttttgcagtctgttaggtgca |
9410423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 506 - 566
Target Start/End: Complemental strand, 9451348 - 9451288
Alignment:
| Q |
506 |
gtcttagtttccttggatataaatattggagcaatttatttgataattctcaattgtgtgt |
566 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
9451348 |
gtcttagtttcctttgatataaaaattggagcaatttatttggcaattctcaattgtgtgt |
9451288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 240 - 286
Target Start/End: Complemental strand, 9431491 - 9431445
Alignment:
| Q |
240 |
tgagtagattgtatcagtgttttgcagtctatcaggtgcacctgtgc |
286 |
Q |
| |
|
||||||||||| |||| ||||||||||||| |||||||||||||||| |
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| T |
9431491 |
tgagtagattgaatcactgttttgcagtctgtcaggtgcacctgtgc |
9431445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 615 - 665
Target Start/End: Complemental strand, 4431595 - 4431545
Alignment:
| Q |
615 |
taccaaaaaggttattctattttcttgttcttaatttaattgaaccatata |
665 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||| |||||||||| |||||| |
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|
| T |
4431595 |
taccaaaatagttattctattttctagttcttattttaattgaatcatata |
4431545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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